Gene annotation
Transcriptome id Sobic.005G137100.1
Synonym SbCHS3;chalcone synthase (CHS)-like gene 3, Chalcone synthase, TT4, Sb05g020210, ATCHS, CHS, SbCHS3
Functional annotation only inducible by pathogen inoculation (PubMedID : 20529887)
SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes. (PubMedID : 15821144)
chalcone synthase, putative, expressed
UniProt C5Y3Q1 , Q9SBL6
Pfam PF08541 PF00195
Panther DB PTHR11877 PTHR11877:SF27
NCBI CDD -
KEGG Orthology K00660; chalcone synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13930 : Chalcone and stilbene synthase family protein
RAP-DB (Rice) LOC_Os11g32650.1 : chalcone synthase, putative, expressed
MaizeGDB (Corn) Zm00025a015696 , Zm00025a033582
Brachypodium KQJ88357
Barley HORVU2Hr1G005220.3 , HORVU2Hr1G005220.2 , HORVU2Hr1G005220.5 , HORVU2Hr1G005220.4 , HORVU2Hr1G004170.4 , HORVU2Hr1G004170.6 , HORVU2Hr1G004170.7 , HORVU1Hr1G004830.1 , HORVU7Hr1G009190.1 , HORVU2Hr1G116390.1 , HORVU6Hr1G074060.1 , HORVU6Hr1G074060.2 , HORVU1Hr1G004840.3 , HORVU1Hr1G004840.2 , HORVU1Hr1G004840.1 , HORVU1Hr1G089540.1 , HORVU2Hr1G116390.2 , HORVU2Hr1G116390.3 , HORVU2Hr1G116390.4
Wheat TraesCS2B02G048400 , TraesCS6A02G298400 , TraesCS6D02G278200 , TraesCS7B02G462200 , TraesCS2B02G038700 , TraesCS2D02G027800 , TraesCS1B02G040200 , TraesCS2B02G558400 , TraesCS2A02G035300 , TraesCS2B02G558400 , TraesCS2A02G025600 , TraesCS2D02G027900 , TraesCS6B02G327900 , TraesCS2B02G613100 , TraesCS2D02G027700 , TraesCS2A02G025700 , TraesCS6A02G015300 , TraesCS2B02G038600 , TraesCS2D02G034500 , TraesCS2A02G527700 , TraesCS2A02G527700 , TraesCS2D02G530600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G137200 only inducible by pathogen inoculation(PubMedID : 20529887)@Chalcone synthase 7 (Os)(PubMedID : 27208977)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
2 Sobic.004G148000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@Cupin domain containing protein, expressed -
3 Sobic.008G030100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone--flavonone isomerase, putative, expressed -
4 Sobic.003G323700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSub6 - Putative Subtilisin homologue, expressed -
5 Sobic.003G387200 - -
6 Sobic.010G004200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 domain containing protein, expressed -
7 Sobic.002G139400 AP2 domain containing protein, expressed -
8 Sobic.003G349600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed -
9 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
10 Sobic.003G164800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.002G263400 expressed protein -
12 Sobic.006G178500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
13 Sobic.001G066000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
15 Sobic.001G495164 - -
16 Sobic.005G136300 chalcone synthase(PubMedID : 26317421)@only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
17 Sobic.002G104900 B12D protein, putative, expressed -
18 Sobic.003G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@WRKY27, expressed -
19 Sobic.004G245800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.005G137000 only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase


Gene co-expression network
sample Sobic005G137100 Sobic005G137100 Sobic005G137200 Sobic005G137200 Sobic005G137100--Sobic005G137200 Sobic004G148000 Sobic004G148000 Sobic005G137100--Sobic004G148000 Sobic008G030100 Sobic008G030100 Sobic005G137100--Sobic008G030100 Sobic003G323700 Sobic003G323700 Sobic005G137100--Sobic003G323700 Sobic003G387200 Sobic003G387200 Sobic005G137100--Sobic003G387200 Sobic010G004200 Sobic010G004200 Sobic005G137100--Sobic010G004200 Sobic002G139400 Sobic002G139400 Sobic005G137100--Sobic002G139400 Sobic003G349600 Sobic003G349600 Sobic005G137100--Sobic003G349600 Sobic003G429300 Sobic003G429300 Sobic005G137100--Sobic003G429300 Sobic005G137200--Sobic005G137100 Sobic005G136300 Sobic005G136300 Sobic005G137200--Sobic005G136300 Sobic005G137000 Sobic005G137000 Sobic005G137200--Sobic005G137000 Sobic003G215800 Sobic003G215800 Sobic005G137200--Sobic003G215800 Sobic001G066000 Sobic001G066000 Sobic005G137200--Sobic001G066000 Sobic001G401300 Sobic001G401300 Sobic005G137200--Sobic001G401300 Sobic005G137200--Sobic010G004200 Sobic005G117400 Sobic005G117400 Sobic005G137200--Sobic005G117400 Sobic001G454100 Sobic001G454100 Sobic005G137200--Sobic001G454100 Sobic002G263400 Sobic002G263400 Sobic004G148000--Sobic002G263400 Sobic004G189400 Sobic004G189400 Sobic004G148000--Sobic004G189400 Sobic003G200700 Sobic003G200700 Sobic004G148000--Sobic003G200700 Sobic004G148200 Sobic004G148200 Sobic004G148000--Sobic004G148200 Sobic007G061300 Sobic007G061300 Sobic004G148000--Sobic007G061300 Sobic008G136400 Sobic008G136400 Sobic004G148000--Sobic008G136400 Sobic003G322900 Sobic003G322900 Sobic004G148000--Sobic003G322900 Sobic002G140400 Sobic002G140400 Sobic004G148000--Sobic002G140400 Sobic002G055600 Sobic002G055600 Sobic004G148000--Sobic002G055600 Sobic001G177800 Sobic001G177800 Sobic008G030100--Sobic001G177800 Sobic004G245800 Sobic004G245800 Sobic008G030100--Sobic004G245800 Sobic001G400800 Sobic001G400800 Sobic008G030100--Sobic001G400800 Sobic010G066601 Sobic010G066601 Sobic008G030100--Sobic010G066601 Sobic007G227300 Sobic007G227300 Sobic008G030100--Sobic007G227300 Sobic008G030100--Sobic008G136400 Sobic008G030100--Sobic004G189400 Sobic001G119400 Sobic001G119400 Sobic008G030100--Sobic001G119400 Sobic007G184600 Sobic007G184600 Sobic008G030100--Sobic007G184600 Sobic002G140300 Sobic002G140300 Sobic003G323700--Sobic002G140300 Sobic009G036100 Sobic009G036100 Sobic003G323700--Sobic009G036100 Sobic003G323700--Sobic003G387200 Sobic004G222500 Sobic004G222500 Sobic003G323700--Sobic004G222500 Sobic001G329800 Sobic001G329800 Sobic003G323700--Sobic001G329800 Sobic006G066200 Sobic006G066200 Sobic003G323700--Sobic006G066200 Sobic001G441100 Sobic001G441100 Sobic003G323700--Sobic001G441100 Sobic003G430400 Sobic003G430400 Sobic003G323700--Sobic003G430400 Sobic002G220000 Sobic002G220000 Sobic003G323700--Sobic002G220000 Sobic006G267000 Sobic006G267000 Sobic003G387200--Sobic006G267000 Sobic003G387200--Sobic003G323700 Sobic003G387200--Sobic001G441100 Sobic001G341600 Sobic001G341600 Sobic003G387200--Sobic001G341600 Sobic001G035000 Sobic001G035000 Sobic003G387200--Sobic001G035000 Sobic006G148000 Sobic006G148000 Sobic003G387200--Sobic006G148000 Sobic003G387200--Sobic002G140300 Sobic003G387200--Sobic003G430400 Sobic007G057700 Sobic007G057700 Sobic003G387200--Sobic007G057700 Sobic004G311750 Sobic004G311750 Sobic010G004200--Sobic004G311750 Sobic010G004200--Sobic001G401300 Sobic001G260000 Sobic001G260000 Sobic010G004200--Sobic001G260000 Sobic010G004200--Sobic005G136300 Sobic010G004200--Sobic003G215800 Sobic008G054150 Sobic008G054150 Sobic010G004200--Sobic008G054150 Sobic010G004200--Sobic003G349600 Sobic010G004200--Sobic005G137200 Sobic004G037000 Sobic004G037000 Sobic010G004200--Sobic004G037000 Sobic004G243100 Sobic004G243100 Sobic002G139400--Sobic004G243100 Sobic009G224100 Sobic009G224100 Sobic002G139400--Sobic009G224100 Sobic002G184200 Sobic002G184200 Sobic002G139400--Sobic002G184200 Sobic001G192200 Sobic001G192200 Sobic002G139400--Sobic001G192200 Sobic001G231400 Sobic001G231400 Sobic002G139400--Sobic001G231400 Sobic002G251000 Sobic002G251000 Sobic002G139400--Sobic002G251000 Sobic003G282901 Sobic003G282901 Sobic002G139400--Sobic003G282901 Sobic001G018300 Sobic001G018300 Sobic002G139400--Sobic001G018300 Sobic001G423800 Sobic001G423800 Sobic002G139400--Sobic001G423800 Sobic003G349600--Sobic004G243100 Sobic003G349600--Sobic009G224100 Sobic001G330100 Sobic001G330100 Sobic003G349600--Sobic001G330100 Sobic007G155200 Sobic007G155200 Sobic003G349600--Sobic007G155200 Sobic003G349600--Sobic002G140400 Sobic008G187001 Sobic008G187001 Sobic003G349600--Sobic008G187001 Sobic007G036900 Sobic007G036900 Sobic003G349600--Sobic007G036900 Sobic003G349600--Sobic002G139400 Sobic003G349600--Sobic002G263400 Sobic007G171000 Sobic007G171000 Sobic003G429300--Sobic007G171000 Sobic006G179500 Sobic006G179500 Sobic003G429300--Sobic006G179500 Sobic008G111100 Sobic008G111100 Sobic003G429300--Sobic008G111100 Sobic002G224100 Sobic002G224100 Sobic003G429300--Sobic002G224100 Sobic003G019200 Sobic003G019200 Sobic003G429300--Sobic003G019200 Sobic002G195900 Sobic002G195900 Sobic003G429300--Sobic002G195900 Sobic006G228300 Sobic006G228300 Sobic003G429300--Sobic006G228300 Sobic010G200700 Sobic010G200700 Sobic003G429300--Sobic010G200700 Sobic002G359300 Sobic002G359300 Sobic003G429300--Sobic002G359300
Octagon: transcription factors


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