Gene annotation
Transcriptome id Sobic.008G030100.2,Sobic.008G030100.1
Synonym Sb08g002620
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
chalcone--flavonone isomerase, putative, expressed
UniProt A0A1B6PB28 , A0A1B6PBA3
Pfam PF02431
Panther DB PTHR28039 PTHR28039:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016872; intramolecular lyase activity


Orthologs (automatic annotation)
TAIR AT5G05270 : Chalcone-flavanone isomerase family protein
RAP-DB (Rice) LOC_Os11g02440.1 : chalcone--flavonone isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a029015
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G030100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
2 Sobic.004G245800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G400800 pathogenesis-related Bet v I family protein, putative, expressed -
4 Sobic.010G066601 - -
5 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.008G136400 expressed protein -
7 Sobic.004G189400 expressed protein -
8 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
10 Sobic.006G148900 phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase
11 Sobic.004G148000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@Cupin domain containing protein, expressed -
12 Sobic.010G213700 GDU1, putative, expressed -
13 Sobic.007G061300 - -
14 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
15 Sobic.002G104900 B12D protein, putative, expressed -
16 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
17 Sobic.009G141800 cytochrome c, putative, expressed K08738: cytochrome c
18 Sobic.002G055600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
19 Sobic.002G326100 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
20 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic008G030100 Sobic008G030100 Sobic001G177800 Sobic001G177800 Sobic008G030100--Sobic001G177800 Sobic004G245800 Sobic004G245800 Sobic008G030100--Sobic004G245800 Sobic001G400800 Sobic001G400800 Sobic008G030100--Sobic001G400800 Sobic010G066601 Sobic010G066601 Sobic008G030100--Sobic010G066601 Sobic007G227300 Sobic007G227300 Sobic008G030100--Sobic007G227300 Sobic008G136400 Sobic008G136400 Sobic008G030100--Sobic008G136400 Sobic004G189400 Sobic004G189400 Sobic008G030100--Sobic004G189400 Sobic001G119400 Sobic001G119400 Sobic008G030100--Sobic001G119400 Sobic007G184600 Sobic007G184600 Sobic008G030100--Sobic007G184600 Sobic001G177800--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic001G177800--Sobic009G139400 Sobic001G374700 Sobic001G374700 Sobic001G177800--Sobic001G374700 Sobic001G402050 Sobic001G402050 Sobic001G177800--Sobic001G402050 Sobic001G177800--Sobic007G227300 Sobic002G200600 Sobic002G200600 Sobic001G177800--Sobic002G200600 Sobic001G177800--Sobic004G189400 Sobic006G099900 Sobic006G099900 Sobic001G177800--Sobic006G099900 Sobic010G009300 Sobic010G009300 Sobic001G177800--Sobic010G009300 Sobic004G245800--Sobic001G400800 Sobic001G400700 Sobic001G400700 Sobic004G245800--Sobic001G400700 Sobic005G101800 Sobic005G101800 Sobic004G245800--Sobic005G101800 Sobic001G187200 Sobic001G187200 Sobic004G245800--Sobic001G187200 Sobic004G245800--Sobic001G177800 Sobic003G252800 Sobic003G252800 Sobic004G245800--Sobic003G252800 Sobic004G245800--Sobic007G227300 Sobic010G084400 Sobic010G084400 Sobic004G245800--Sobic010G084400 Sobic005G029200 Sobic005G029200 Sobic004G245800--Sobic005G029200 Sobic001G400800--Sobic007G227300 Sobic001G400800--Sobic001G400700 Sobic001G400800--Sobic004G245800 Sobic001G400800--Sobic005G101800 Sobic001G400800--Sobic003G252800 Sobic001G400800--Sobic001G177800 Sobic001G400800--Sobic006G099900 Sobic001G400800--Sobic010G084400 Sobic001G400800--Sobic001G187200 Sobic009G141800 Sobic009G141800 Sobic010G066601--Sobic009G141800 Sobic010G066601--Sobic008G030100 Sobic010G178500 Sobic010G178500 Sobic010G066601--Sobic010G178500 Sobic010G066601--Sobic008G136400 Sobic002G104900 Sobic002G104900 Sobic010G066601--Sobic002G104900 Sobic004G321300 Sobic004G321300 Sobic010G066601--Sobic004G321300 Sobic010G066601--Sobic004G189400 Sobic003G387000 Sobic003G387000 Sobic010G066601--Sobic003G387000 Sobic001G107400 Sobic001G107400 Sobic010G066601--Sobic001G107400 Sobic007G227300--Sobic006G099900 Sobic003G200700 Sobic003G200700 Sobic007G227300--Sobic003G200700 Sobic007G227300--Sobic001G400800 Sobic007G227300--Sobic003G252800 Sobic006G268800 Sobic006G268800 Sobic007G227300--Sobic006G268800 Sobic006G277600 Sobic006G277600 Sobic007G227300--Sobic006G277600 Sobic004G148200 Sobic004G148200 Sobic007G227300--Sobic004G148200 Sobic009G240600 Sobic009G240600 Sobic007G227300--Sobic009G240600 Sobic005G206601 Sobic005G206601 Sobic007G227300--Sobic005G206601 Sobic001G038900 Sobic001G038900 Sobic008G136400--Sobic001G038900 Sobic008G050600 Sobic008G050600 Sobic008G136400--Sobic008G050600 Sobic002G140400 Sobic002G140400 Sobic008G136400--Sobic002G140400 Sobic006G275200 Sobic006G275200 Sobic008G136400--Sobic006G275200 Sobic001G140900 Sobic001G140900 Sobic008G136400--Sobic001G140900 Sobic006G158600 Sobic006G158600 Sobic008G136400--Sobic006G158600 Sobic008G136400--Sobic004G189400 Sobic001G423800 Sobic001G423800 Sobic008G136400--Sobic001G423800 Sobic009G008900 Sobic009G008900 Sobic008G136400--Sobic009G008900 Sobic004G189400--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G189400--Sobic005G091500 Sobic002G263400 Sobic002G263400 Sobic004G189400--Sobic002G263400 Sobic004G189400--Sobic008G050600 Sobic004G237800 Sobic004G237800 Sobic004G189400--Sobic004G237800 Sobic003G382600 Sobic003G382600 Sobic004G189400--Sobic003G382600 Sobic004G189400--Sobic006G099900 Sobic004G189400--Sobic008G136400 Sobic004G189400--Sobic005G029200 Sobic009G183400 Sobic009G183400 Sobic001G119400--Sobic009G183400 Sobic001G119400--Sobic001G423800 Sobic002G393000 Sobic002G393000 Sobic001G119400--Sobic002G393000 Sobic001G119400--Sobic009G008900 Sobic001G119400--Sobic009G139400 Sobic001G119400--Sobic001G038900 Sobic001G119400--Sobic006G275200 Sobic001G119400--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic001G119400--Sobic003G417800 Sobic007G184600--Sobic002G200600 Sobic007G184600--Sobic001G374700 Sobic007G184600--Sobic001G402050 Sobic002G081600 Sobic002G081600 Sobic007G184600--Sobic002G081600 Sobic001G493001 Sobic001G493001 Sobic007G184600--Sobic001G493001 Sobic007G184600--Sobic001G177800 Sobic006G067800 Sobic006G067800 Sobic007G184600--Sobic006G067800 Sobic003G322400 Sobic003G322400 Sobic007G184600--Sobic003G322400 Sobic003G346600 Sobic003G346600 Sobic007G184600--Sobic003G346600
Octagon: transcription factors


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