Gene annotation
Transcriptome id Sobic.006G148900.1
Synonym Sb06g022750, ATPAL1, PAL1
Functional annotation phenylalanine ammonia-lyase, putative, expressed
UniProt A0A1Z5RDZ8
Pfam PF00221
Panther DB PTHR10362 PTHR10362:SF9
NCBI CDD -
KEGG Orthology K10775; phenylalanine ammonia-lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37040 : PHE ammonia lyase 1
RAP-DB (Rice) LOC_Os04g43800.1 : phenylalanine ammonia-lyase, putative, expressed
MaizeGDB (Corn) Zm00025a021097 , Zm00025a021100 , Zm00025a021102 , Zm00025a021099 , Zm00025a032035 , Zm00025a032034 , Zm00025a032030 , Zm00025a007342 , Zm00025a010654 , Zm00025a010653
Brachypodium KQJ83619 , KQK00414 , KQK00065 , KQK00064 , KQK00416 , KQK00417 , KQK00357 , KQK00415
Barley HORVU2Hr1G038140.4 , HORVU2Hr1G038140.5 , HORVU2Hr1G038140.2 , HORVU2Hr1G038140.3 , HORVU2Hr1G038140.1 , HORVU2Hr1G089440.17 , HORVU2Hr1G089440.16 , HORVU2Hr1G089440.12 , HORVU2Hr1G089440.11 , HORVU2Hr1G089440.10 , HORVU6Hr1G058820.7 , HORVU6Hr1G058820.5 , HORVU6Hr1G058820.4 , HORVU6Hr1G058820.3 , HORVU6Hr1G058820.2 , HORVU6Hr1G058820.1 , HORVU6Hr1G058820.9 , HORVU6Hr1G058820.8 , HORVU2Hr1G089440.2 , HORVU0Hr1G016330.3 , HORVU0Hr1G016330.2 , HORVU0Hr1G016330.1 , HORVU0Hr1G016330.7 , HORVU0Hr1G016330.6 , HORVU0Hr1G016330.5 , HORVU0Hr1G016330.4 , HORVU0Hr1G016330.9 , HORVU0Hr1G016330.8 , HORVU2Hr1G089540.1 , HORVU1Hr1G022060.1 , HORVU1Hr1G022060.2 , HORVU2Hr1G038120.4 , HORVU2Hr1G038120.5 , HORVU2Hr1G038120.6 , HORVU2Hr1G038120.1 , HORVU2Hr1G038120.2 , HORVU2Hr1G038120.3 , HORVU0Hr1G016330.10 , HORVU2Hr1G089440.9 , HORVU2Hr1G089440.8 , HORVU2Hr1G089440.6 , HORVU2Hr1G089440.5 , HORVU2Hr1G089440.4 , HORVU2Hr1G089440.3 , HORVU2Hr1G089440.1 , HORVU6Hr1G058820.6 , HORVU6Hr1G058820.12 , HORVU6Hr1G058820.11 , HORVU6Hr1G058820.10 , HORVU6Hr1G058840.1 , HORVU6Hr1G058840.2
Wheat TraesCS1D02G039300 , TraesCS1D02G039400 , TraesCS2B02G020100 , TraesCS2D02G377400 , TraesCS5B02G468400 , TraesCS2D02G377200 , TraesCS6A02G222900 , TraesCS1B02G048300 , TraesCS2B02G398200 , TraesCS2B02G398000 , TraesCS1D02G039500 , TraesCS5B02G468300 , TraesCS2D02G377600 , TraesCS4A02G401300 , TraesCS2A02G381000 , TraesCS2A02G381100 , TraesCS2A02G380800 , TraesCS1B02G048400 , TraesCS1B02G048400 , TraesCS1B02G048500 , TraesCS1B02G048500 , TraesCS2B02G398400 , TraesCS2A02G380900 , TraesCS3A02G029200 , TraesCS1B02G048200 , TraesCS6D02G212200 , TraesCS6D02G212200 , TraesCS2B02G398100 , TraesCS2B02G398300 , TraesCS2B02G398300 , TraesCS2B02G398000 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS3D02G016300 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS1B02G048100 , TraesCS1B02G048100 , TraesCS1A02G037800 , TraesCS6A02G222800 , TraesCS6B02G258500 , TraesCS6B02G258500 , TraesCS2D02G377500
Populus -


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cDNA sequences
Sobic.006G148900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G423800 DNA binding protein, putative, expressed -
2 Sobic.010G084700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
3 Sobic.010G176600 - -
4 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
5 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
6 Sobic.004G189400 expressed protein -
7 Sobic.002G251000 expressed protein -
8 Sobic.003G282901 - -
9 Sobic.004G216600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
10 Sobic.001G192200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
11 Sobic.007G155100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
12 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.004G243100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
14 Sobic.003G252800 hypothetical protein -
15 Sobic.004G301000 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
16 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
17 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
18 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
20 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic006G148900 Sobic006G148900 Sobic001G423800 Sobic001G423800 Sobic006G148900--Sobic001G423800 Sobic010G084700 Sobic010G084700 Sobic006G148900--Sobic010G084700 Sobic010G176600 Sobic010G176600 Sobic006G148900--Sobic010G176600 Sobic004G221500 Sobic004G221500 Sobic006G148900--Sobic004G221500 Sobic001G177800 Sobic001G177800 Sobic006G148900--Sobic001G177800 Sobic004G189400 Sobic004G189400 Sobic006G148900--Sobic004G189400 Sobic002G251000 Sobic002G251000 Sobic006G148900--Sobic002G251000 Sobic003G282901 Sobic003G282901 Sobic006G148900--Sobic003G282901 Sobic004G216600 Sobic004G216600 Sobic006G148900--Sobic004G216600 Sobic004G243100 Sobic004G243100 Sobic001G423800--Sobic004G243100 Sobic002G140400 Sobic002G140400 Sobic001G423800--Sobic002G140400 Sobic001G038900 Sobic001G038900 Sobic001G423800--Sobic001G038900 Sobic001G119400 Sobic001G119400 Sobic001G423800--Sobic001G119400 Sobic001G018300 Sobic001G018300 Sobic001G423800--Sobic001G018300 Sobic007G155100 Sobic007G155100 Sobic001G423800--Sobic007G155100 Sobic008G136400 Sobic008G136400 Sobic001G423800--Sobic008G136400 Sobic002G393000 Sobic002G393000 Sobic001G423800--Sobic002G393000 Sobic001G423800--Sobic004G189400 Sobic010G084700--Sobic004G221500 Sobic010G084100 Sobic010G084100 Sobic010G084700--Sobic010G084100 Sobic010G117900 Sobic010G117900 Sobic010G084700--Sobic010G117900 Sobic002G184200 Sobic002G184200 Sobic010G084700--Sobic002G184200 Sobic010G084700--Sobic010G176600 Sobic003G286600 Sobic003G286600 Sobic010G084700--Sobic003G286600 Sobic001G348700 Sobic001G348700 Sobic010G084700--Sobic001G348700 Sobic010G084700--Sobic001G423800 Sobic001G192200 Sobic001G192200 Sobic010G084700--Sobic001G192200 Sobic010G176600--Sobic003G286600 Sobic005G063100 Sobic005G063100 Sobic010G176600--Sobic005G063100 Sobic010G176600--Sobic002G140400 Sobic008G050600 Sobic008G050600 Sobic010G176600--Sobic008G050600 Sobic010G176600--Sobic001G423800 Sobic009G234100 Sobic009G234100 Sobic010G176600--Sobic009G234100 Sobic010G176600--Sobic010G084700 Sobic003G116800 Sobic003G116800 Sobic010G176600--Sobic003G116800 Sobic010G176600--Sobic004G189400 Sobic004G221500--Sobic010G084700 Sobic006G084600 Sobic006G084600 Sobic004G221500--Sobic006G084600 Sobic004G221500--Sobic001G348700 Sobic004G221500--Sobic002G184200 Sobic004G221500--Sobic001G423800 Sobic004G221500--Sobic010G084100 Sobic003G252800 Sobic003G252800 Sobic004G221500--Sobic003G252800 Sobic004G221500--Sobic003G286600 Sobic004G221500--Sobic010G117900 Sobic007G184600 Sobic007G184600 Sobic001G177800--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic001G177800--Sobic009G139400 Sobic001G374700 Sobic001G374700 Sobic001G177800--Sobic001G374700 Sobic001G402050 Sobic001G402050 Sobic001G177800--Sobic001G402050 Sobic007G227300 Sobic007G227300 Sobic001G177800--Sobic007G227300 Sobic002G200600 Sobic002G200600 Sobic001G177800--Sobic002G200600 Sobic001G177800--Sobic004G189400 Sobic006G099900 Sobic006G099900 Sobic001G177800--Sobic006G099900 Sobic010G009300 Sobic010G009300 Sobic001G177800--Sobic010G009300 Sobic004G189400--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G189400--Sobic005G091500 Sobic002G263400 Sobic002G263400 Sobic004G189400--Sobic002G263400 Sobic004G189400--Sobic008G050600 Sobic004G237800 Sobic004G237800 Sobic004G189400--Sobic004G237800 Sobic003G382600 Sobic003G382600 Sobic004G189400--Sobic003G382600 Sobic004G189400--Sobic006G099900 Sobic004G189400--Sobic008G136400 Sobic005G029200 Sobic005G029200 Sobic004G189400--Sobic005G029200 Sobic002G251000--Sobic004G243100 Sobic001G318700 Sobic001G318700 Sobic002G251000--Sobic001G318700 Sobic002G251000--Sobic001G423800 Sobic001G231400 Sobic001G231400 Sobic002G251000--Sobic001G231400 Sobic002G251000--Sobic001G018300 Sobic002G251000--Sobic001G192200 Sobic002G251000--Sobic003G282901 Sobic002G251000--Sobic002G140400 Sobic002G251000--Sobic004G189400 Sobic003G282901--Sobic004G243100 Sobic003G282901--Sobic002G263400 Sobic003G282901--Sobic002G251000 Sobic003G282901--Sobic001G018300 Sobic003G282901--Sobic002G140400 Sobic003G282901--Sobic001G423800 Sobic009G224100 Sobic009G224100 Sobic003G282901--Sobic009G224100 Sobic002G139400 Sobic002G139400 Sobic003G282901--Sobic002G139400 Sobic003G282901--Sobic002G184200 Sobic009G061200 Sobic009G061200 Sobic004G216600--Sobic009G061200 Sobic004G216600--Sobic001G119400 Sobic001G319600 Sobic001G319600 Sobic004G216600--Sobic001G319600 Sobic001G317200 Sobic001G317200 Sobic004G216600--Sobic001G317200 Sobic009G183400 Sobic009G183400 Sobic004G216600--Sobic009G183400 Sobic004G216600--Sobic002G393000 Sobic004G216600--Sobic004G221500 Sobic004G216600--Sobic001G423800 Sobic004G216600--Sobic001G348700
Octagon: transcription factors


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