Gene annotation
Transcriptome id Sobic.005G136300.1
Synonym TT4, SbCHS4, ATCHS, CHS;Chalcone synthase, CHS, Sb05g020160, SbCHS4;chalcone synthase (CHS)-like gene 4
Functional annotation chalcone synthase (PubMedID : 26317421)
only inducible by pathogen inoculation (PubMedID : 20529887)
SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes. (PubMedID : 15821144)
chalcone synthase, putative, expressed
UniProt C5Y3P6 , Q9SBL5
Pfam PF08541 PF00195
Panther DB PTHR11877 PTHR11877:SF27
NCBI CDD -
KEGG Orthology K00660; chalcone synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13930 : Chalcone and stilbene synthase family protein
RAP-DB (Rice) LOC_Os11g32650.1 : chalcone synthase, putative, expressed
MaizeGDB (Corn) Zm00025a015696 , Zm00025a033582
Brachypodium KQJ88357
Barley HORVU2Hr1G005220.3 , HORVU2Hr1G005220.2 , HORVU2Hr1G005220.1 , HORVU2Hr1G005220.5 , HORVU2Hr1G005220.4 , HORVU2Hr1G004170.1 , HORVU2Hr1G004170.2 , HORVU2Hr1G004170.3 , HORVU2Hr1G004170.4 , HORVU2Hr1G004170.5 , HORVU1Hr1G004830.1 , HORVU7Hr1G009190.1 , HORVU2Hr1G116390.1 , HORVU6Hr1G074060.1 , HORVU6Hr1G074060.2 , HORVU1Hr1G004840.3 , HORVU1Hr1G004840.2 , HORVU1Hr1G004840.1 , HORVU1Hr1G089540.1 , HORVU2Hr1G116390.2 , HORVU2Hr1G116390.3 , HORVU2Hr1G116390.4
Wheat TraesCS2B02G048400 , TraesCS6A02G298400 , TraesCS6D02G278200 , TraesCS7B02G462200 , TraesCS1B02G040200 , TraesCS2B02G558400 , TraesCS2A02G035300 , TraesCS2B02G558400 , TraesCS6B02G327900 , TraesCS2B02G613100 , TraesCS5D02G488600 , TraesCS1B02G041000 , TraesCS2D02G027700 , TraesCS2D02G034500 , TraesCS2A02G527700 , TraesCS2A02G527700 , TraesCS5D02G488700 , TraesCS2D02G530600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G136300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G000400 "A single-copy gene, share a similar catalytic mechanism with the licorice and Medicago truncatula FNSIIs (CYP93B subfamily) by converting flavanones to flavone through the formation of 2-hydroxyflavanones, CYP93B subfamily"(PubMedID : 20007684)@enzyme relate to flavone pathway(PubMedID : 27917182)@cytochrome P450, putative, expressed -
2 Sobic.005G137200 only inducible by pathogen inoculation(PubMedID : 20529887)@Chalcone synthase 7 (Os)(PubMedID : 27208977)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
3 Sobic.005G137000 only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
4 Sobic.001G401300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PR10(PubMedID : 20078779)@accumulation during fungal development(PubMedID : 10356799)@pathogenesis-related Bet v I family protein, putative, expressed -
5 Sobic.010G004200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 domain containing protein, expressed -
6 Sobic.003G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
7 Sobic.005G137100 only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
8 Sobic.006G226800 enzyme relate to 3-deoxyanthocyanidine pathway P/tan gene(PubMedID : 26994288)@leucoanthocyanidin reductase, putative, expressed K08695: anthocyanidin reductase
9 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
10 Sobic.005G137300 only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
11 Sobic.005G131700 - -
12 Sobic.005G037100 receptor-like protein kinase, putative, expressed -
13 Sobic.001G401200 pathogenesis-related Bet v I family protein, putative, expressed -
14 Sobic.003G216232 - -
15 Sobic.001G454100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
16 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.001G066000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.004G304400 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
19 Sobic.003G164800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.006G039700 expressed protein -


Gene co-expression network
sample Sobic005G136300 Sobic005G136300 Sobic002G000400 Sobic002G000400 Sobic005G136300--Sobic002G000400 Sobic005G137200 Sobic005G137200 Sobic005G136300--Sobic005G137200 Sobic005G137000 Sobic005G137000 Sobic005G136300--Sobic005G137000 Sobic001G401300 Sobic001G401300 Sobic005G136300--Sobic001G401300 Sobic010G004200 Sobic010G004200 Sobic005G136300--Sobic010G004200 Sobic003G215800 Sobic003G215800 Sobic005G136300--Sobic003G215800 Sobic005G137100 Sobic005G137100 Sobic005G136300--Sobic005G137100 Sobic006G226800 Sobic006G226800 Sobic005G136300--Sobic006G226800 Sobic005G117400 Sobic005G117400 Sobic005G136300--Sobic005G117400 Sobic002G000400--Sobic005G136300 Sobic002G000400--Sobic005G137000 Sobic002G000400--Sobic005G137200 Sobic002G000400--Sobic006G226800 Sobic005G131700 Sobic005G131700 Sobic002G000400--Sobic005G131700 Sobic002G000400--Sobic010G004200 Sobic002G000400--Sobic001G401300 Sobic003G216232 Sobic003G216232 Sobic002G000400--Sobic003G216232 Sobic005G037100 Sobic005G037100 Sobic002G000400--Sobic005G037100 Sobic005G137200--Sobic005G137100 Sobic005G137200--Sobic005G136300 Sobic005G137200--Sobic005G137000 Sobic005G137200--Sobic003G215800 Sobic001G066000 Sobic001G066000 Sobic005G137200--Sobic001G066000 Sobic005G137200--Sobic001G401300 Sobic005G137200--Sobic010G004200 Sobic005G137200--Sobic005G117400 Sobic001G454100 Sobic001G454100 Sobic005G137200--Sobic001G454100 Sobic005G137000--Sobic005G136300 Sobic005G137000--Sobic005G137200 Sobic002G035700 Sobic002G035700 Sobic005G137000--Sobic002G035700 Sobic002G217166 Sobic002G217166 Sobic005G137000--Sobic002G217166 Sobic005G137000--Sobic002G000400 Sobic005G137000--Sobic005G137100 Sobic005G137000--Sobic010G004200 Sobic003G164800 Sobic003G164800 Sobic005G137000--Sobic003G164800 Sobic009G003900 Sobic009G003900 Sobic005G137000--Sobic009G003900 Sobic001G401200 Sobic001G401200 Sobic001G401300--Sobic001G401200 Sobic001G400700 Sobic001G400700 Sobic001G401300--Sobic001G400700 Sobic008G034500 Sobic008G034500 Sobic001G401300--Sobic008G034500 Sobic001G401300--Sobic003G215800 Sobic002G333900 Sobic002G333900 Sobic001G401300--Sobic002G333900 Sobic008G191600 Sobic008G191600 Sobic001G401300--Sobic008G191600 Sobic001G247900 Sobic001G247900 Sobic001G401300--Sobic001G247900 Sobic006G039700 Sobic006G039700 Sobic001G401300--Sobic006G039700 Sobic009G043600 Sobic009G043600 Sobic001G401300--Sobic009G043600 Sobic004G311750 Sobic004G311750 Sobic010G004200--Sobic004G311750 Sobic010G004200--Sobic001G401300 Sobic001G260000 Sobic001G260000 Sobic010G004200--Sobic001G260000 Sobic010G004200--Sobic005G136300 Sobic010G004200--Sobic003G215800 Sobic008G054150 Sobic008G054150 Sobic010G004200--Sobic008G054150 Sobic003G349600 Sobic003G349600 Sobic010G004200--Sobic003G349600 Sobic010G004200--Sobic005G137200 Sobic004G037000 Sobic004G037000 Sobic010G004200--Sobic004G037000 Sobic003G215800--Sobic001G401300 Sobic003G215800--Sobic005G137200 Sobic002G090200 Sobic002G090200 Sobic003G215800--Sobic002G090200 Sobic003G215800--Sobic001G454100 Sobic003G215800--Sobic008G034500 Sobic001G466000 Sobic001G466000 Sobic003G215800--Sobic001G466000 Sobic010G107100 Sobic010G107100 Sobic003G215800--Sobic010G107100 Sobic004G058000 Sobic004G058000 Sobic003G215800--Sobic004G058000 Sobic003G215800--Sobic010G004200 Sobic005G137100--Sobic005G137200 Sobic004G148000 Sobic004G148000 Sobic005G137100--Sobic004G148000 Sobic008G030100 Sobic008G030100 Sobic005G137100--Sobic008G030100 Sobic003G323700 Sobic003G323700 Sobic005G137100--Sobic003G323700 Sobic003G387200 Sobic003G387200 Sobic005G137100--Sobic003G387200 Sobic005G137100--Sobic010G004200 Sobic002G139400 Sobic002G139400 Sobic005G137100--Sobic002G139400 Sobic005G137100--Sobic003G349600 Sobic003G429300 Sobic003G429300 Sobic005G137100--Sobic003G429300 Sobic005G126200 Sobic005G126200 Sobic006G226800--Sobic005G126200 Sobic006G226800--Sobic005G136300 Sobic006G226800--Sobic002G000400 Sobic005G224900 Sobic005G224900 Sobic006G226800--Sobic005G224900 Sobic006G226800--Sobic005G131700 Sobic003G031100 Sobic003G031100 Sobic006G226800--Sobic003G031100 Sobic006G226800--Sobic003G216232 Sobic009G041000 Sobic009G041000 Sobic006G226800--Sobic009G041000 Sobic001G409200 Sobic001G409200 Sobic006G226800--Sobic001G409200 Sobic004G158901 Sobic004G158901 Sobic005G117400--Sobic004G158901 Sobic007G125900 Sobic007G125900 Sobic005G117400--Sobic007G125900 Sobic005G117400--Sobic004G058000 Sobic002G249000 Sobic002G249000 Sobic005G117400--Sobic002G249000 Sobic003G348400 Sobic003G348400 Sobic005G117400--Sobic003G348400 Sobic004G050000 Sobic004G050000 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic007G025700 Sobic007G025700 Sobic005G117400--Sobic007G025700 Sobic010G224200 Sobic010G224200 Sobic005G117400--Sobic010G224200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.