Gene annotation
Transcriptome id Sobic.005G137300.1
Synonym Chalcone synthase, TT4, Sb05g020230, SbCHS6;chalcone synthase (CHS)-like gene 6, ATCHS, SbCHS6, CHS
Functional annotation only inducible by pathogen inoculation (PubMedID : 20529887)
SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes. (PubMedID : 15821144)
chalcone synthase, putative, expressed
UniProt C5Y3Q3 , Q9SBL3
Pfam PF08541 PF00195
Panther DB PTHR11877 PTHR11877:SF27
NCBI CDD -
KEGG Orthology K00660; chalcone synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13930 : Chalcone and stilbene synthase family protein
RAP-DB (Rice) LOC_Os11g32650.1 : chalcone synthase, putative, expressed
MaizeGDB (Corn) Zm00025a015696 , Zm00025a033582
Brachypodium KQJ88357
Barley HORVU2Hr1G005220.3 , HORVU2Hr1G005220.2 , HORVU2Hr1G005220.5 , HORVU2Hr1G005220.4 , HORVU2Hr1G004170.1 , HORVU2Hr1G004170.2 , HORVU2Hr1G004170.3 , HORVU2Hr1G004170.4 , HORVU2Hr1G004170.5 , HORVU2Hr1G116390.1 , HORVU1Hr1G089540.1 , HORVU2Hr1G116390.2 , HORVU2Hr1G116390.3
Wheat TraesCS2B02G048400 , TraesCS7B02G462200 , TraesCS2B02G038700 , TraesCS2D02G034500 , TraesCS2B02G558400 , TraesCS2B02G558400 , TraesCS2A02G035300 , TraesCS2A02G025600 , TraesCS2B02G613100 , TraesCS5D02G488600 , TraesCS2A02G025700 , TraesCS6A02G015300 , TraesCS2B02G038600 , TraesCS2A02G527700 , TraesCS2A02G527700 , TraesCS5D02G488700 , TraesCS2A02G025500 , TraesCS2D02G530600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G136300 chalcone synthase(PubMedID : 26317421)@only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
2 Sobic.003G164800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.008G030100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone--flavonone isomerase, putative, expressed -
4 Sobic.001G401200 pathogenesis-related Bet v I family protein, putative, expressed -
5 Sobic.005G137200 only inducible by pathogen inoculation(PubMedID : 20529887)@Chalcone synthase 7 (Os)(PubMedID : 27208977)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
6 Sobic.010G004200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 domain containing protein, expressed -
7 Sobic.001G401300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PR10(PubMedID : 20078779)@accumulation during fungal development(PubMedID : 10356799)@pathogenesis-related Bet v I family protein, putative, expressed -
8 Sobic.005G136200 up-regulated following either light exposure or fungal inoculation (PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
9 Sobic.005G137100 only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
10 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.004G037600 molybdenum cofactor synthesis protein 2 large subunit, putative, expressed K03635: MOCS2B, molybdopterin synthase catalytic subunit
12 Sobic.008G187300 expressed protein -
13 Sobic.003G425850 - K00799: GST, glutathione S-transferase
14 Sobic.004G245800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G417350 - -
16 Sobic.003G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
17 Sobic.003G349600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed -
18 Sobic.008G191600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@vesicle-associated membrane protein, putative, expressed -
19 Sobic.001G247900 "Protein chitinase 2, putative, (Os)"(PubMedID : 27208977)@chitinase 2, putative, expressed -
20 Sobic.005G137000 only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase


Gene co-expression network
sample Sobic005G137300 Sobic005G137300 Sobic005G136300 Sobic005G136300 Sobic005G137300--Sobic005G136300 Sobic003G164800 Sobic003G164800 Sobic005G137300--Sobic003G164800 Sobic008G030100 Sobic008G030100 Sobic005G137300--Sobic008G030100 Sobic001G401200 Sobic001G401200 Sobic005G137300--Sobic001G401200 Sobic005G137200 Sobic005G137200 Sobic005G137300--Sobic005G137200 Sobic010G004200 Sobic010G004200 Sobic005G137300--Sobic010G004200 Sobic001G401300 Sobic001G401300 Sobic005G137300--Sobic001G401300 Sobic005G136200 Sobic005G136200 Sobic005G137300--Sobic005G136200 Sobic005G137100 Sobic005G137100 Sobic005G137300--Sobic005G137100 Sobic002G000400 Sobic002G000400 Sobic005G136300--Sobic002G000400 Sobic005G136300--Sobic005G137200 Sobic005G137000 Sobic005G137000 Sobic005G136300--Sobic005G137000 Sobic005G136300--Sobic001G401300 Sobic005G136300--Sobic010G004200 Sobic003G215800 Sobic003G215800 Sobic005G136300--Sobic003G215800 Sobic005G136300--Sobic005G137100 Sobic006G226800 Sobic006G226800 Sobic005G136300--Sobic006G226800 Sobic005G117400 Sobic005G117400 Sobic005G136300--Sobic005G117400 Sobic002G195400 Sobic002G195400 Sobic003G164800--Sobic002G195400 Sobic007G067600 Sobic007G067600 Sobic003G164800--Sobic007G067600 Sobic005G101800 Sobic005G101800 Sobic003G164800--Sobic005G101800 Sobic010G117900 Sobic010G117900 Sobic003G164800--Sobic010G117900 Sobic001G319700 Sobic001G319700 Sobic003G164800--Sobic001G319700 Sobic003G426000 Sobic003G426000 Sobic003G164800--Sobic003G426000 Sobic010G102300 Sobic010G102300 Sobic003G164800--Sobic010G102300 Sobic004G088551 Sobic004G088551 Sobic003G164800--Sobic004G088551 Sobic001G495164 Sobic001G495164 Sobic003G164800--Sobic001G495164 Sobic001G177800 Sobic001G177800 Sobic008G030100--Sobic001G177800 Sobic004G245800 Sobic004G245800 Sobic008G030100--Sobic004G245800 Sobic001G400800 Sobic001G400800 Sobic008G030100--Sobic001G400800 Sobic010G066601 Sobic010G066601 Sobic008G030100--Sobic010G066601 Sobic007G227300 Sobic007G227300 Sobic008G030100--Sobic007G227300 Sobic008G136400 Sobic008G136400 Sobic008G030100--Sobic008G136400 Sobic004G189400 Sobic004G189400 Sobic008G030100--Sobic004G189400 Sobic001G119400 Sobic001G119400 Sobic008G030100--Sobic001G119400 Sobic007G184600 Sobic007G184600 Sobic008G030100--Sobic007G184600 Sobic001G400700 Sobic001G400700 Sobic001G401200--Sobic001G400700 Sobic001G401200--Sobic001G401300 Sobic001G401200--Sobic001G400800 Sobic001G401200--Sobic004G245800 Sobic009G043600 Sobic009G043600 Sobic001G401200--Sobic009G043600 Sobic006G106800 Sobic006G106800 Sobic001G401200--Sobic006G106800 Sobic002G353900 Sobic002G353900 Sobic001G401200--Sobic002G353900 Sobic001G401100 Sobic001G401100 Sobic001G401200--Sobic001G401100 Sobic002G367400 Sobic002G367400 Sobic001G401200--Sobic002G367400 Sobic005G137200--Sobic005G137100 Sobic005G137200--Sobic005G136300 Sobic005G137200--Sobic005G137000 Sobic005G137200--Sobic003G215800 Sobic001G066000 Sobic001G066000 Sobic005G137200--Sobic001G066000 Sobic005G137200--Sobic001G401300 Sobic005G137200--Sobic010G004200 Sobic005G137200--Sobic005G117400 Sobic001G454100 Sobic001G454100 Sobic005G137200--Sobic001G454100 Sobic004G311750 Sobic004G311750 Sobic010G004200--Sobic004G311750 Sobic010G004200--Sobic001G401300 Sobic001G260000 Sobic001G260000 Sobic010G004200--Sobic001G260000 Sobic010G004200--Sobic005G136300 Sobic010G004200--Sobic003G215800 Sobic008G054150 Sobic008G054150 Sobic010G004200--Sobic008G054150 Sobic003G349600 Sobic003G349600 Sobic010G004200--Sobic003G349600 Sobic010G004200--Sobic005G137200 Sobic004G037000 Sobic004G037000 Sobic010G004200--Sobic004G037000 Sobic001G401300--Sobic001G401200 Sobic001G401300--Sobic001G400700 Sobic008G034500 Sobic008G034500 Sobic001G401300--Sobic008G034500 Sobic001G401300--Sobic003G215800 Sobic002G333900 Sobic002G333900 Sobic001G401300--Sobic002G333900 Sobic008G191600 Sobic008G191600 Sobic001G401300--Sobic008G191600 Sobic001G247900 Sobic001G247900 Sobic001G401300--Sobic001G247900 Sobic006G039700 Sobic006G039700 Sobic001G401300--Sobic006G039700 Sobic001G401300--Sobic009G043600 Sobic005G136200--Sobic005G137300 Sobic002G347300 Sobic002G347300 Sobic005G136200--Sobic002G347300 Sobic004G201100 Sobic004G201100 Sobic005G136200--Sobic004G201100 Sobic009G215000 Sobic009G215000 Sobic005G136200--Sobic009G215000 Sobic002G073800 Sobic002G073800 Sobic005G136200--Sobic002G073800 Sobic002G053900 Sobic002G053900 Sobic005G136200--Sobic002G053900 Sobic004G099900 Sobic004G099900 Sobic005G136200--Sobic004G099900 Sobic009G072800 Sobic009G072800 Sobic005G136200--Sobic009G072800 Sobic003G203500 Sobic003G203500 Sobic005G136200--Sobic003G203500 Sobic005G137100--Sobic005G137200 Sobic004G148000 Sobic004G148000 Sobic005G137100--Sobic004G148000 Sobic005G137100--Sobic008G030100 Sobic003G323700 Sobic003G323700 Sobic005G137100--Sobic003G323700 Sobic003G387200 Sobic003G387200 Sobic005G137100--Sobic003G387200 Sobic005G137100--Sobic010G004200 Sobic002G139400 Sobic002G139400 Sobic005G137100--Sobic002G139400 Sobic005G137100--Sobic003G349600 Sobic003G429300 Sobic003G429300 Sobic005G137100--Sobic003G429300
Octagon: transcription factors


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