Gene annotation
Transcriptome id Sobic.005G137000.1
Synonym Chalcone synthase, SbCHS1;chalcone synthase (CHS)-like gene 1, TT4, SbCHS1, Sb05g020200, ATCHS, CHS
Functional annotation only inducible by pathogen inoculation (PubMedID : 20529887)
SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes. (PubMedID : 15821144)
chalcone synthase, putative, expressed
UniProt C5Y3Q0 , Q9XGX2
Pfam PF08541 PF00195
Panther DB PTHR11877 PTHR11877:SF27
NCBI CDD -
KEGG Orthology K00660; chalcone synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13930 : Chalcone and stilbene synthase family protein
RAP-DB (Rice) LOC_Os11g32650.1 : chalcone synthase, putative, expressed
MaizeGDB (Corn) Zm00025a015696 , Zm00025a033582
Brachypodium KQJ88357
Barley HORVU2Hr1G005220.3 , HORVU2Hr1G005220.2 , HORVU2Hr1G005220.1 , HORVU2Hr1G004170.3 , HORVU2Hr1G005220.5 , HORVU2Hr1G005220.4 , HORVU2Hr1G004170.1 , HORVU2Hr1G004170.2 , HORVU2Hr1G004170.4 , HORVU2Hr1G004170.5 , HORVU2Hr1G004170.6 , HORVU7Hr1G009190.1 , HORVU2Hr1G116390.1 , HORVU6Hr1G074060.1 , HORVU6Hr1G074060.2 , HORVU1Hr1G089540.1 , HORVU2Hr1G116390.2 , HORVU2Hr1G116390.3 , HORVU2Hr1G116390.4
Wheat TraesCS2B02G048400 , TraesCS6A02G298400 , TraesCS6D02G278200 , TraesCS7B02G462200 , TraesCS2B02G038700 , TraesCS2D02G027800 , TraesCS1B02G040200 , TraesCS2B02G558400 , TraesCS2A02G035300 , TraesCS2B02G558400 , TraesCS2A02G025600 , TraesCS2D02G027900 , TraesCS6B02G327900 , TraesCS2B02G613100 , TraesCS5D02G488600 , TraesCS2D02G027700 , TraesCS2A02G025700 , TraesCS2B02G038600 , TraesCS2D02G034500 , TraesCS2A02G527700 , TraesCS2A02G527700 , TraesCS5D02G488700 , TraesCS2A02G025500 , TraesCS2D02G530600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G136300 chalcone synthase(PubMedID : 26317421)@only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
2 Sobic.005G137200 only inducible by pathogen inoculation(PubMedID : 20529887)@Chalcone synthase 7 (Os)(PubMedID : 27208977)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
3 Sobic.002G035700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glutathione S-transferase, N-terminal domain containing protein, expressed K00799: GST, glutathione S-transferase
4 Sobic.002G217166 - -
5 Sobic.002G000400 "A single-copy gene, share a similar catalytic mechanism with the licorice and Medicago truncatula FNSIIs (CYP93B subfamily) by converting flavanones to flavone through the formation of 2-hydroxyflavanones, CYP93B subfamily"(PubMedID : 20007684)@enzyme relate to flavone pathway(PubMedID : 27917182)@cytochrome P450, putative, expressed -
6 Sobic.005G137100 only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
7 Sobic.010G004200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 domain containing protein, expressed -
8 Sobic.003G164800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
10 Sobic.004G304100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
11 Sobic.001G066000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.003G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
13 Sobic.005G212700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.001G401300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PR10(PubMedID : 20078779)@accumulation during fungal development(PubMedID : 10356799)@pathogenesis-related Bet v I family protein, putative, expressed -
15 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
16 Sobic.006G218300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
17 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
18 Sobic.004G074500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
19 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.003G425850 - K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic005G137000 Sobic005G137000 Sobic005G136300 Sobic005G136300 Sobic005G137000--Sobic005G136300 Sobic005G137200 Sobic005G137200 Sobic005G137000--Sobic005G137200 Sobic002G035700 Sobic002G035700 Sobic005G137000--Sobic002G035700 Sobic002G217166 Sobic002G217166 Sobic005G137000--Sobic002G217166 Sobic002G000400 Sobic002G000400 Sobic005G137000--Sobic002G000400 Sobic005G137100 Sobic005G137100 Sobic005G137000--Sobic005G137100 Sobic010G004200 Sobic010G004200 Sobic005G137000--Sobic010G004200 Sobic003G164800 Sobic003G164800 Sobic005G137000--Sobic003G164800 Sobic009G003900 Sobic009G003900 Sobic005G137000--Sobic009G003900 Sobic005G136300--Sobic002G000400 Sobic005G136300--Sobic005G137200 Sobic005G136300--Sobic005G137000 Sobic001G401300 Sobic001G401300 Sobic005G136300--Sobic001G401300 Sobic005G136300--Sobic010G004200 Sobic003G215800 Sobic003G215800 Sobic005G136300--Sobic003G215800 Sobic005G136300--Sobic005G137100 Sobic006G226800 Sobic006G226800 Sobic005G136300--Sobic006G226800 Sobic005G117400 Sobic005G117400 Sobic005G136300--Sobic005G117400 Sobic005G137200--Sobic005G137100 Sobic005G137200--Sobic005G136300 Sobic005G137200--Sobic005G137000 Sobic005G137200--Sobic003G215800 Sobic001G066000 Sobic001G066000 Sobic005G137200--Sobic001G066000 Sobic005G137200--Sobic001G401300 Sobic005G137200--Sobic010G004200 Sobic005G137200--Sobic005G117400 Sobic001G454100 Sobic001G454100 Sobic005G137200--Sobic001G454100 Sobic002G035700--Sobic005G137000 Sobic006G261550 Sobic006G261550 Sobic002G035700--Sobic006G261550 Sobic002G035700--Sobic002G217166 Sobic004G304100 Sobic004G304100 Sobic002G035700--Sobic004G304100 Sobic005G212700 Sobic005G212700 Sobic002G035700--Sobic005G212700 Sobic002G035700--Sobic005G137200 Sobic004G074500 Sobic004G074500 Sobic002G035700--Sobic004G074500 Sobic002G035700--Sobic009G003900 Sobic002G035700--Sobic005G136300 Sobic002G217166--Sobic005G137000 Sobic002G217166--Sobic004G304100 Sobic002G217166--Sobic003G164800 Sobic001G231600 Sobic001G231600 Sobic002G217166--Sobic001G231600 Sobic001G495164 Sobic001G495164 Sobic002G217166--Sobic001G495164 Sobic010G102300 Sobic010G102300 Sobic002G217166--Sobic010G102300 Sobic004G277000 Sobic004G277000 Sobic002G217166--Sobic004G277000 Sobic004G304300 Sobic004G304300 Sobic002G217166--Sobic004G304300 Sobic007G135201 Sobic007G135201 Sobic002G217166--Sobic007G135201 Sobic002G000400--Sobic005G136300 Sobic002G000400--Sobic005G137000 Sobic002G000400--Sobic005G137200 Sobic002G000400--Sobic006G226800 Sobic005G131700 Sobic005G131700 Sobic002G000400--Sobic005G131700 Sobic002G000400--Sobic010G004200 Sobic002G000400--Sobic001G401300 Sobic003G216232 Sobic003G216232 Sobic002G000400--Sobic003G216232 Sobic005G037100 Sobic005G037100 Sobic002G000400--Sobic005G037100 Sobic005G137100--Sobic005G137200 Sobic004G148000 Sobic004G148000 Sobic005G137100--Sobic004G148000 Sobic008G030100 Sobic008G030100 Sobic005G137100--Sobic008G030100 Sobic003G323700 Sobic003G323700 Sobic005G137100--Sobic003G323700 Sobic003G387200 Sobic003G387200 Sobic005G137100--Sobic003G387200 Sobic005G137100--Sobic010G004200 Sobic002G139400 Sobic002G139400 Sobic005G137100--Sobic002G139400 Sobic003G349600 Sobic003G349600 Sobic005G137100--Sobic003G349600 Sobic003G429300 Sobic003G429300 Sobic005G137100--Sobic003G429300 Sobic004G311750 Sobic004G311750 Sobic010G004200--Sobic004G311750 Sobic010G004200--Sobic001G401300 Sobic001G260000 Sobic001G260000 Sobic010G004200--Sobic001G260000 Sobic010G004200--Sobic005G136300 Sobic010G004200--Sobic003G215800 Sobic008G054150 Sobic008G054150 Sobic010G004200--Sobic008G054150 Sobic010G004200--Sobic003G349600 Sobic010G004200--Sobic005G137200 Sobic004G037000 Sobic004G037000 Sobic010G004200--Sobic004G037000 Sobic002G195400 Sobic002G195400 Sobic003G164800--Sobic002G195400 Sobic007G067600 Sobic007G067600 Sobic003G164800--Sobic007G067600 Sobic005G101800 Sobic005G101800 Sobic003G164800--Sobic005G101800 Sobic010G117900 Sobic010G117900 Sobic003G164800--Sobic010G117900 Sobic001G319700 Sobic001G319700 Sobic003G164800--Sobic001G319700 Sobic003G426000 Sobic003G426000 Sobic003G164800--Sobic003G426000 Sobic003G164800--Sobic010G102300 Sobic004G088551 Sobic004G088551 Sobic003G164800--Sobic004G088551 Sobic003G164800--Sobic001G495164 Sobic009G003900--Sobic004G277000 Sobic002G249000 Sobic002G249000 Sobic009G003900--Sobic002G249000 Sobic004G050000 Sobic004G050000 Sobic009G003900--Sobic004G050000 Sobic009G003900--Sobic005G117400 Sobic002G264400 Sobic002G264400 Sobic009G003900--Sobic002G264400 Sobic001G184000 Sobic001G184000 Sobic009G003900--Sobic001G184000 Sobic002G090200 Sobic002G090200 Sobic009G003900--Sobic002G090200 Sobic002G180600 Sobic002G180600 Sobic009G003900--Sobic002G180600 Sobic010G072000 Sobic010G072000 Sobic009G003900--Sobic010G072000
Octagon: transcription factors


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