Gene annotation
Transcriptome id Sobic.004G304100.1,Sobic.004G304100.2
Synonym Sb04g033720
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt C5XSQ3 , A0A194YSI3
Pfam PF13561 PF00106
Panther DB PTHR24322 PTHR24322:SF453 PTHR24322 PTHR24322:SF376
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K15095; (+)-neomenthol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G01800 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os02g42810.1,LOC_Os04g44980.1 : short-chain dehydrogenase/reductase, putative, expressed,oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032122
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G304300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
2 Sobic.007G066932 - -
3 Sobic.003G426100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
5 Sobic.003G164800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
7 Sobic.003G425850 - K00799: GST, glutathione S-transferase
8 Sobic.001G319500 Relative abundance under control condition and upregulated in cold susceptible sorghum under cold stress(PubMedID : 26645959)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.004G088551 - -
10 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
11 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.010G102300 expressed protein -
13 Sobic.004G277000 purine permease, putative, expressed -
14 Sobic.001G319700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.003G240600 VQ domain containing protein, putative, expressed -
16 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
17 Sobic.007G067350 - -
18 Sobic.004G245800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.006G199100 pathogenesis-related Bet v I family protein, putative, expressed -


Gene co-expression network
sample Sobic004G304100 Sobic004G304100 Sobic004G304300 Sobic004G304300 Sobic004G304100--Sobic004G304300 Sobic007G066932 Sobic007G066932 Sobic004G304100--Sobic007G066932 Sobic003G426100 Sobic003G426100 Sobic004G304100--Sobic003G426100 Sobic002G195400 Sobic002G195400 Sobic004G304100--Sobic002G195400 Sobic003G164800 Sobic003G164800 Sobic004G304100--Sobic003G164800 Sobic005G101800 Sobic005G101800 Sobic004G304100--Sobic005G101800 Sobic003G425850 Sobic003G425850 Sobic004G304100--Sobic003G425850 Sobic001G319500 Sobic001G319500 Sobic004G304100--Sobic001G319500 Sobic004G088551 Sobic004G088551 Sobic004G304100--Sobic004G088551 Sobic004G304300--Sobic007G066932 Sobic004G304300--Sobic003G426100 Sobic004G304300--Sobic002G195400 Sobic003G426000 Sobic003G426000 Sobic004G304300--Sobic003G426000 Sobic010G102300 Sobic010G102300 Sobic004G304300--Sobic010G102300 Sobic007G067350 Sobic007G067350 Sobic004G304300--Sobic007G067350 Sobic001G319700 Sobic001G319700 Sobic004G304300--Sobic001G319700 Sobic004G304300--Sobic005G101800 Sobic009G128700 Sobic009G128700 Sobic004G304300--Sobic009G128700 Sobic007G066932--Sobic007G067350 Sobic007G066932--Sobic003G426100 Sobic007G066932--Sobic002G195400 Sobic007G066932--Sobic010G102300 Sobic007G067600 Sobic007G067600 Sobic007G066932--Sobic007G067600 Sobic007G066932--Sobic004G304300 Sobic007G066932--Sobic001G319700 Sobic006G084600 Sobic006G084600 Sobic007G066932--Sobic006G084600 Sobic007G135201 Sobic007G135201 Sobic007G066932--Sobic007G135201 Sobic003G426100--Sobic007G066932 Sobic003G426100--Sobic002G195400 Sobic010G035700 Sobic010G035700 Sobic003G426100--Sobic010G035700 Sobic003G426100--Sobic010G102300 Sobic003G426100--Sobic007G067350 Sobic003G426100--Sobic004G304300 Sobic003G426100--Sobic001G319700 Sobic003G426100--Sobic007G135201 Sobic003G426100--Sobic007G067600 Sobic002G195400--Sobic007G067600 Sobic002G195400--Sobic001G319700 Sobic002G195400--Sobic003G426100 Sobic002G195400--Sobic007G066932 Sobic002G195400--Sobic010G102300 Sobic002G195400--Sobic003G426000 Sobic002G195400--Sobic007G067350 Sobic001G317000 Sobic001G317000 Sobic002G195400--Sobic001G317000 Sobic002G195400--Sobic004G304300 Sobic003G164800--Sobic002G195400 Sobic003G164800--Sobic007G067600 Sobic003G164800--Sobic005G101800 Sobic010G117900 Sobic010G117900 Sobic003G164800--Sobic010G117900 Sobic003G164800--Sobic001G319700 Sobic003G164800--Sobic003G426000 Sobic003G164800--Sobic010G102300 Sobic003G164800--Sobic004G088551 Sobic001G495164 Sobic001G495164 Sobic003G164800--Sobic001G495164 Sobic010G084400 Sobic010G084400 Sobic005G101800--Sobic010G084400 Sobic005G101800--Sobic010G117900 Sobic003G252800 Sobic003G252800 Sobic005G101800--Sobic003G252800 Sobic007G227300 Sobic007G227300 Sobic005G101800--Sobic007G227300 Sobic001G317200 Sobic001G317200 Sobic005G101800--Sobic001G317200 Sobic003G426300 Sobic003G426300 Sobic005G101800--Sobic003G426300 Sobic006G099900 Sobic006G099900 Sobic005G101800--Sobic006G099900 Sobic005G101800--Sobic009G128700 Sobic001G400800 Sobic001G400800 Sobic005G101800--Sobic001G400800 Sobic009G043600 Sobic009G043600 Sobic003G425850--Sobic009G043600 Sobic003G425850--Sobic004G304100 Sobic002G267500 Sobic002G267500 Sobic003G425850--Sobic002G267500 Sobic006G199100 Sobic006G199100 Sobic003G425850--Sobic006G199100 Sobic004G050000 Sobic004G050000 Sobic003G425850--Sobic004G050000 Sobic009G008900 Sobic009G008900 Sobic003G425850--Sobic009G008900 Sobic006G173900 Sobic006G173900 Sobic003G425850--Sobic006G173900 Sobic004G277000 Sobic004G277000 Sobic003G425850--Sobic004G277000 Sobic001G400700 Sobic001G400700 Sobic003G425850--Sobic001G400700 Sobic001G319500--Sobic006G173900 Sobic001G319600 Sobic001G319600 Sobic001G319500--Sobic001G319600 Sobic001G319500--Sobic005G101800 Sobic010G099900 Sobic010G099900 Sobic001G319500--Sobic010G099900 Sobic001G319500--Sobic010G117900 Sobic002G393000 Sobic002G393000 Sobic001G319500--Sobic002G393000 Sobic008G136400 Sobic008G136400 Sobic001G319500--Sobic008G136400 Sobic001G319500--Sobic001G400700 Sobic002G183200 Sobic002G183200 Sobic001G319500--Sobic002G183200 Sobic004G088551--Sobic001G317000 Sobic004G088551--Sobic002G195400 Sobic004G088551--Sobic005G101800 Sobic004G088551--Sobic007G067600 Sobic004G088551--Sobic010G117900 Sobic004G088551--Sobic001G317200 Sobic001G423800 Sobic001G423800 Sobic004G088551--Sobic001G423800 Sobic007G061300 Sobic007G061300 Sobic004G088551--Sobic007G061300 Sobic004G112300 Sobic004G112300 Sobic004G088551--Sobic004G112300
Octagon: transcription factors


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