Gene annotation
| Transcriptome id | Sobic.010G004200.3,Sobic.010G004200.1,Sobic.010G004200.2 |
|---|---|
| Synonym | Sb10g000580 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) integral membrane protein DUF6 domain containing protein, expressed |
| UniProt | C5Z254 , A0A1W0VQX9 |
| Pfam | PF00892 |
| Panther DB | PTHR31218 PTHR31218:SF14 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane GO:0016020membrane |
Orthologs (automatic annotation)
| TAIR | AT5G47470 : Nodulin MtN21 /EamA-like transporter family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g01660.1 : integral membrane protein DUF6 domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a050310 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G311750 | - | - |
| 2 | Sobic.001G401300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PR10(PubMedID : 20078779)@accumulation during fungal development(PubMedID : 10356799)@pathogenesis-related Bet v I family protein, putative, expressed | - |
| 3 | Sobic.001G260000 | SAP domain containing protein, expressed | - |
| 4 | Sobic.005G136300 | chalcone synthase(PubMedID : 26317421)@only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed | K00660: chalcone synthase |
| 5 | Sobic.003G215800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed | - |
| 6 | Sobic.008G054150 | - | - |
| 7 | Sobic.003G349600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed | - |
| 8 | Sobic.005G137200 | only inducible by pathogen inoculation(PubMedID : 20529887)@Chalcone synthase 7 (Os)(PubMedID : 27208977)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed | K00660: chalcone synthase |
| 9 | Sobic.004G037000 | tRNA synthetases class II domain containing protein, expressed | K01876: aspartyl-tRNA synthetase |
| 10 | Sobic.005G137100 | only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed | K00660: chalcone synthase |
| 11 | Sobic.006G107200 | molybdopterin biosynthesis protein CNX3, putative, expressed | K03639: moaA, GTP 3',8-cyclase |
| 12 | Sobic.004G115500 | expressed protein | - |
| 13 | Sobic.004G228500 | plastocyanin-like domain containing protein, putative, expressed | - |
| 14 | Sobic.001G343601 | - | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 15 | Sobic.003G152100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed | - |
| 16 | Sobic.004G341000 | OsFBX66 - F-box domain containing protein, expressed | - |
| 17 | Sobic.008G029400 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@WRKY DNA-binding protein 55("PubMedID : 26759170,PubMedID : 24597475")@WRKY46, expressed | - |
| 18 | Sobic.010G084100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@12-oxophytodienoate reductase, putative, expressed | K05894: 12-oxophytodienoic acid reductase |
| 19 | Sobic.007G155200 | bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed | K01674: carbonic anhydrase |
| 20 | Sobic.002G184200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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