Gene annotation
| Transcriptome id | Sobic.005G136200.1 |
|---|---|
| Synonym | Sb05g020150, Chalcone synthase, TT4, SbCHS5, ATCHS, CHS, SbCHS5;chalcone synthase (CHS)-like gene 5 |
| Functional annotation | up-regulated following either light exposure or fungal inoculation (PubMedID : 20529887) SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes. (PubMedID : 15821144) chalcone synthase, putative, expressed |
| UniProt | C5Y3P5 , Q9SBL4 |
| Pfam | PF08541 PF00195 |
| Panther DB | PTHR11877 PTHR11877:SF27 |
| NCBI CDD | - |
| KEGG Orthology | K00660; chalcone synthase |
| Gene Ontology | GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process |
Orthologs (automatic annotation)
| TAIR | AT5G13930 : Chalcone and stilbene synthase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os11g32650.1 : chalcone synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a015696 , Zm00025a033582 |
| Brachypodium | KQJ88357 |
| Barley | HORVU2Hr1G005220.3 , HORVU2Hr1G005220.2 , HORVU2Hr1G005220.5 , HORVU2Hr1G005220.4 , HORVU2Hr1G116390.1 , HORVU1Hr1G089540.1 , HORVU2Hr1G116390.2 , HORVU2Hr1G116390.3 |
| Wheat | TraesCS2B02G048400 , TraesCS7B02G462200 , TraesCS2B02G038700 , TraesCS1B02G040200 , TraesCS2B02G558400 , TraesCS2A02G035300 , TraesCS2B02G558400 , TraesCS2A02G025600 , TraesCS2D02G027900 , TraesCS2B02G613100 , TraesCS5D02G488600 , TraesCS2D02G027700 , TraesCS2A02G025700 , TraesCS2B02G038600 , TraesCS2D02G034500 , TraesCS2A02G527700 , TraesCS2A02G527700 , TraesCS5D02G488700 , TraesCS2D02G530600 |
| Populus | - |
JBrowse
| Sobic.005G136200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G137300 | only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed | K00660: chalcone synthase |
| 2 | Sobic.002G347300 | copper methylamine oxidase precursor, putative, expressed | K00276: AOC3, AOC2, primary-amine oxidase |
| 3 | Sobic.004G201100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@The B-phenyl ring of naringenin can be hydroxylated at the 3' positions to produce eriodictyol(PubMedID : 16943219)@cytochrome P450, putative, expressed | K05280: flavonoid 3'-monooxygenase |
| 4 | Sobic.009G215000 | - | - |
| 5 | Sobic.002G073800 | vacuolar ATPase G subunit, putative, expressed | K02152: ATPeV1G, V-type H+-transporting ATPase subunit G |
| 6 | Sobic.002G053900 | Cupin domain containing protein, expressed | - |
| 7 | Sobic.004G099900 | early nodulin 93 ENOD93 protein, putative, expressed | - |
| 8 | Sobic.009G072800 | proteophosphoglycan ppg4, putative, expressed | - |
| 9 | Sobic.003G203500 | "cinnamoyl-CoA reductase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed | K12355: coniferyl-aldehyde dehydrogenase |
| 10 | Sobic.003G410500 | transaldolase, putative, expressed | K00616: E2.2.1.2, talA, transaldolase |
| 11 | Sobic.003G201200 | hsp20/alpha crystallin family protein, putative, expressed | - |
| 12 | Sobic.001G345900 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 13 | Sobic.001G012400 | "UDP-glucose glucosyltransferase, up-regulated under drought stress "(PubMedID : 24655390)@p-hydroxymandelonitrile-O-glucosyltransferase(PubMedID : 10585420)@-(PubMedID : 27964718)@UDP-glucose:p-hydroxymandelonitrile-O-glucosyltransferase. in vitro substrate regiospecificity(PubMedID : 12946413)@"Cyanohydrin beta-glucosyltransferase, similar to UDP-glucose glucosyltransferase, dhurrin biosynthesis"(PubMedID : 10585420)@cytokinin-O-glucosyltransferase 2, putative, expressed | K13030: cyanohydrin beta-glucosyltransferase |
| 14 | Sobic.002G119900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed | - |
| 15 | Sobic.001G035600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@induced by either light or pathogen inoculation in the BTx623 seedlings(PubMedID : 20529887)@"The bmr30 mutant harbors a mutation in a phenylpropanoid biosynthetic gene that is key to the interconnection between flavonoids and monolignols, both of which are utilized for lignin synthesis in the grasses."(PubMedID : 34925394)@expressed protein | K01859: chalcone isomerase |
| 16 | Sobic.001G107100 | "SRS5(Ortholog in rice:Segami, 2012)"(PubMedID : 31659833)@tubulin/FtsZ domain containing protein, putative, expressed | K07374: tubulin alpha |
| 17 | Sobic.006G201400 | seed specific protein Bn15D1B, putative, expressed | - |
| 18 | Sobic.001G334900 | X8 domain containing protein, expressed | - |
| 19 | Sobic.001G478000 | CutA, chloroplast precursor, putative, expressed | K03926: periplasmic divalent cation tolerance protein |
| 20 | Sobic.002G338400 | uncharacterized secreted protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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