Gene annotation
Transcriptome id Sobic.002G053900.1
Synonym Sb02g004500, GLP10
Functional annotation Cupin domain containing protein, expressed
UniProt C5XB21
Pfam PF07883
Panther DB PTHR31238 PTHR31238:SF39
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62020 : germin-like protein 10
RAP-DB (Rice) LOC_Os05g19670.1 : Cupin domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035173 , Zm00025a024209 , Zm00025a045177 , Zm00025a019053
Brachypodium KQK03989 , PNT62629
Barley -
Wheat TraesCS1B02G098000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G046800 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.009G072800 proteophosphoglycan ppg4, putative, expressed -
3 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
4 Sobic.010G106700 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
5 Sobic.010G047600 plant protein of unknown function domain containing protein, expressed -
6 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
7 Sobic.001G190500 dirigent, putative, expressed -
8 Sobic.009G215000 - -
9 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
10 Sobic.001G261460 - -
11 Sobic.003G206700 heavy metal-associated domain containing protein, expressed -
12 Sobic.002G244300 fasciclin domain containing protein, expressed -
13 Sobic.001G208600 receptor kinase like protein, putative, expressed -
14 Sobic.003G269100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AWPM-19-like membrane family protein, putative, expressed -
15 Sobic.005G052500 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
16 Sobic.001G068500 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
17 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
18 Sobic.003G321400 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.001G144800 LTPL72 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.001G059500 LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic002G053900 Sobic002G053900 Sobic001G046800 Sobic001G046800 Sobic002G053900--Sobic001G046800 Sobic009G072800 Sobic009G072800 Sobic002G053900--Sobic009G072800 Sobic009G008800 Sobic009G008800 Sobic002G053900--Sobic009G008800 Sobic010G106700 Sobic010G106700 Sobic002G053900--Sobic010G106700 Sobic010G047600 Sobic010G047600 Sobic002G053900--Sobic010G047600 Sobic001G484000 Sobic001G484000 Sobic002G053900--Sobic001G484000 Sobic001G190500 Sobic001G190500 Sobic002G053900--Sobic001G190500 Sobic009G215000 Sobic009G215000 Sobic002G053900--Sobic009G215000 Sobic003G239100 Sobic003G239100 Sobic002G053900--Sobic003G239100 Sobic001G046800--Sobic010G047600 Sobic001G261460 Sobic001G261460 Sobic001G046800--Sobic001G261460 Sobic001G046800--Sobic010G106700 Sobic001G046800--Sobic002G053900 Sobic001G046800--Sobic009G008800 Sobic001G046800--Sobic001G484000 Sobic010G014400 Sobic010G014400 Sobic001G046800--Sobic010G014400 Sobic003G321400 Sobic003G321400 Sobic001G046800--Sobic003G321400 Sobic003G250700 Sobic003G250700 Sobic001G046800--Sobic003G250700 Sobic009G072800--Sobic001G190500 Sobic009G072800--Sobic002G053900 Sobic009G072800--Sobic001G046800 Sobic009G072800--Sobic009G215000 Sobic001G068500 Sobic001G068500 Sobic009G072800--Sobic001G068500 Sobic002G311501 Sobic002G311501 Sobic009G072800--Sobic002G311501 Sobic009G072800--Sobic001G261460 Sobic009G072800--Sobic009G008800 Sobic009G072800--Sobic003G250700 Sobic001G059500 Sobic001G059500 Sobic009G008800--Sobic001G059500 Sobic009G008800--Sobic010G106700 Sobic003G352700 Sobic003G352700 Sobic009G008800--Sobic003G352700 Sobic009G008800--Sobic001G068500 Sobic003G082700 Sobic003G082700 Sobic009G008800--Sobic003G082700 Sobic009G008800--Sobic001G046800 Sobic009G008800--Sobic003G239100 Sobic001G144800 Sobic001G144800 Sobic009G008800--Sobic001G144800 Sobic003G206700 Sobic003G206700 Sobic009G008800--Sobic003G206700 Sobic010G106700--Sobic001G046800 Sobic010G106700--Sobic009G008800 Sobic010G106700--Sobic002G053900 Sobic010G106700--Sobic010G047600 Sobic010G106700--Sobic001G059500 Sobic010G106700--Sobic003G352700 Sobic010G106700--Sobic001G261460 Sobic010G106700--Sobic001G068500 Sobic010G106700--Sobic003G082700 Sobic010G047600--Sobic001G261460 Sobic010G047600--Sobic001G046800 Sobic010G047600--Sobic003G321400 Sobic009G221800 Sobic009G221800 Sobic010G047600--Sobic009G221800 Sobic001G514200 Sobic001G514200 Sobic010G047600--Sobic001G514200 Sobic003G078900 Sobic003G078900 Sobic010G047600--Sobic003G078900 Sobic003G000200 Sobic003G000200 Sobic010G047600--Sobic003G000200 Sobic003G115200 Sobic003G115200 Sobic010G047600--Sobic003G115200 Sobic004G050700 Sobic004G050700 Sobic010G047600--Sobic004G050700 Sobic005G052500 Sobic005G052500 Sobic001G484000--Sobic005G052500 Sobic001G484000--Sobic001G046800 Sobic001G484000--Sobic003G352700 Sobic001G484000--Sobic002G053900 Sobic003G269100 Sobic003G269100 Sobic001G484000--Sobic003G269100 Sobic001G484000--Sobic003G082700 Sobic002G094600 Sobic002G094600 Sobic001G484000--Sobic002G094600 Sobic001G484000--Sobic009G008800 Sobic001G484000--Sobic003G239100 Sobic001G190500--Sobic009G072800 Sobic001G190500--Sobic002G053900 Sobic001G190500--Sobic001G046800 Sobic001G190500--Sobic002G311501 Sobic001G190500--Sobic009G215000 Sobic002G003700 Sobic002G003700 Sobic001G190500--Sobic002G003700 Sobic001G190500--Sobic001G261460 Sobic006G170600 Sobic006G170600 Sobic001G190500--Sobic006G170600 Sobic001G190500--Sobic010G047600 Sobic009G215000--Sobic002G053900 Sobic009G215000--Sobic001G046800 Sobic009G215000--Sobic009G008800 Sobic009G215000--Sobic010G106700 Sobic009G215000--Sobic001G484000 Sobic009G215000--Sobic009G072800 Sobic009G215000--Sobic005G052500 Sobic001G208600 Sobic001G208600 Sobic009G215000--Sobic001G208600 Sobic009G215000--Sobic003G206700 Sobic003G239100--Sobic003G082700 Sobic003G239100--Sobic009G008800 Sobic003G239100--Sobic003G352700 Sobic005G145100 Sobic005G145100 Sobic003G239100--Sobic005G145100 Sobic004G266700 Sobic004G266700 Sobic003G239100--Sobic004G266700 Sobic005G127200 Sobic005G127200 Sobic003G239100--Sobic005G127200 Sobic003G239100--Sobic002G053900 Sobic002G030800 Sobic002G030800 Sobic003G239100--Sobic002G030800 Sobic003G239100--Sobic001G484000
Octagon: transcription factors


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