Gene annotation
Transcriptome id Sobic.005G052500.1
Synonym influx carriers auxin resistant 1/like aux1, Sb05g004250, LAX3, SbLAX4
Functional annotation "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments" (PubMedID : 20528920)
transmembrane amino acid transporter protein, putative, expressed
UniProt C5Y5L4
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF3
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology K13946; AUX1, auxin influx carrier (AUX1 LAX family)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G21050 : like AUXIN RESISTANT 2
RAP-DB (Rice) LOC_Os11g06820.1 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a043787 , Zm00025a003791 , Zm00025a026807 , Zm00025a033966 , Zm00025a001545
Brachypodium KQK10644 , KQK10645 , KQJ96114 , KQK22608
Barley HORVU4Hr1G063650.4 , HORVU4Hr1G063650.6 , HORVU4Hr1G063650.1 , HORVU4Hr1G063650.2 , HORVU1Hr1G073490.6 , HORVU1Hr1G073490.7 , HORVU1Hr1G073490.4 , HORVU1Hr1G073490.5 , HORVU1Hr1G073490.2 , HORVU1Hr1G073490.1 , HORVU1Hr1G073490.8 , HORVU1Hr1G073490.9 , HORVU4Hr1G019930.1 , HORVU4Hr1G019930.2 , HORVU4Hr1G019930.3 , HORVU4Hr1G019930.4 , HORVU4Hr1G019930.5 , HORVU6Hr1G031510.1 , HORVU3Hr1G084750.1 , HORVU3Hr1G084750.3 , HORVU3Hr1G084750.5 , HORVU3Hr1G084750.4 , HORVU3Hr1G084750.7 , HORVU3Hr1G084750.6 , HORVU1Hr1G016700.3 , HORVU1Hr1G016700.1 , HORVU4Hr1G063650.5 , HORVU4Hr1G063650.7 , HORVU4Hr1G063650.3 , HORVU4Hr1G063650.8 , HORVU3Hr1G084750.2
Wheat TraesCS3A02G369200 , TraesCS1D02G277600 , TraesCS4D02G227200 , TraesCS3B02G401000 , TraesCS3D02G362100 , TraesCS4D02G108800 , TraesCS4B02G226500 , TraesCS1B02G095900 , TraesCS4A02G207600 , TraesCS1A02G278400 , TraesCS1A02G077800 , TraesCS4B02G111100 , TraesCS1D02G079900 , TraesCS4A02G070500 , TraesCS1B02G287300
Populus PNT48601 , PNT48602 , PNT21150 , PNT41723 , PNT41724


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
2 Sobic.001G046800 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.003G269100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AWPM-19-like membrane family protein, putative, expressed -
4 Sobic.010G106700 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
5 Sobic.010G047600 plant protein of unknown function domain containing protein, expressed -
6 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
7 Sobic.004G297950 - -
8 Sobic.002G053900 Cupin domain containing protein, expressed -
9 Sobic.003G321400 plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
11 Sobic.003G099166 - -
12 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
13 Sobic.001G314000 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.009G215000 - -
15 Sobic.010G014400 - -
16 Sobic.002G094600 "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed K10999: cellulose synthase A
17 Sobic.006G160900 NAC domain containing protein, putative, expressed -
18 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
19 Sobic.005G110600 glycosyl hydrolase, putative, expressed K01183: chitinase
20 Sobic.001G261460 - -


Gene co-expression network
sample Sobic005G052500 Sobic005G052500 Sobic001G484000 Sobic001G484000 Sobic005G052500--Sobic001G484000 Sobic001G046800 Sobic001G046800 Sobic005G052500--Sobic001G046800 Sobic003G269100 Sobic003G269100 Sobic005G052500--Sobic003G269100 Sobic010G106700 Sobic010G106700 Sobic005G052500--Sobic010G106700 Sobic010G047600 Sobic010G047600 Sobic005G052500--Sobic010G047600 Sobic003G352700 Sobic003G352700 Sobic005G052500--Sobic003G352700 Sobic004G297950 Sobic004G297950 Sobic005G052500--Sobic004G297950 Sobic002G053900 Sobic002G053900 Sobic005G052500--Sobic002G053900 Sobic003G321400 Sobic003G321400 Sobic005G052500--Sobic003G321400 Sobic001G484000--Sobic005G052500 Sobic001G484000--Sobic001G046800 Sobic001G484000--Sobic003G352700 Sobic001G484000--Sobic002G053900 Sobic001G484000--Sobic003G269100 Sobic003G082700 Sobic003G082700 Sobic001G484000--Sobic003G082700 Sobic002G094600 Sobic002G094600 Sobic001G484000--Sobic002G094600 Sobic009G008800 Sobic009G008800 Sobic001G484000--Sobic009G008800 Sobic003G239100 Sobic003G239100 Sobic001G484000--Sobic003G239100 Sobic001G046800--Sobic010G047600 Sobic001G261460 Sobic001G261460 Sobic001G046800--Sobic001G261460 Sobic001G046800--Sobic010G106700 Sobic001G046800--Sobic002G053900 Sobic001G046800--Sobic009G008800 Sobic001G046800--Sobic001G484000 Sobic010G014400 Sobic010G014400 Sobic001G046800--Sobic010G014400 Sobic001G046800--Sobic003G321400 Sobic003G250700 Sobic003G250700 Sobic001G046800--Sobic003G250700 Sobic003G269100--Sobic003G321400 Sobic001G099600 Sobic001G099600 Sobic003G269100--Sobic001G099600 Sobic003G269100--Sobic004G297950 Sobic003G115200 Sobic003G115200 Sobic003G269100--Sobic003G115200 Sobic003G269100--Sobic010G047600 Sobic003G269100--Sobic001G261460 Sobic001G264400 Sobic001G264400 Sobic003G269100--Sobic001G264400 Sobic003G269100--Sobic001G484000 Sobic003G269100--Sobic001G046800 Sobic010G106700--Sobic001G046800 Sobic010G106700--Sobic009G008800 Sobic010G106700--Sobic002G053900 Sobic010G106700--Sobic010G047600 Sobic001G059500 Sobic001G059500 Sobic010G106700--Sobic001G059500 Sobic010G106700--Sobic003G352700 Sobic010G106700--Sobic001G261460 Sobic001G068500 Sobic001G068500 Sobic010G106700--Sobic001G068500 Sobic010G106700--Sobic003G082700 Sobic010G047600--Sobic001G261460 Sobic010G047600--Sobic001G046800 Sobic010G047600--Sobic003G321400 Sobic009G221800 Sobic009G221800 Sobic010G047600--Sobic009G221800 Sobic001G514200 Sobic001G514200 Sobic010G047600--Sobic001G514200 Sobic003G078900 Sobic003G078900 Sobic010G047600--Sobic003G078900 Sobic003G000200 Sobic003G000200 Sobic010G047600--Sobic003G000200 Sobic010G047600--Sobic003G115200 Sobic004G050700 Sobic004G050700 Sobic010G047600--Sobic004G050700 Sobic003G352700--Sobic003G082700 Sobic004G047600 Sobic004G047600 Sobic003G352700--Sobic004G047600 Sobic003G352700--Sobic009G008800 Sobic003G352700--Sobic003G239100 Sobic003G352700--Sobic001G068500 Sobic003G352700--Sobic001G484000 Sobic003G352700--Sobic001G059500 Sobic005G127200 Sobic005G127200 Sobic003G352700--Sobic005G127200 Sobic007G047300 Sobic007G047300 Sobic003G352700--Sobic007G047300 Sobic004G297950--Sobic003G269100 Sobic005G130600 Sobic005G130600 Sobic004G297950--Sobic005G130600 Sobic004G297950--Sobic003G321400 Sobic005G110600 Sobic005G110600 Sobic004G297950--Sobic005G110600 Sobic005G047100 Sobic005G047100 Sobic004G297950--Sobic005G047100 Sobic004G297950--Sobic001G099600 Sobic004G297950--Sobic001G264400 Sobic004G297950--Sobic005G052500 Sobic004G297950--Sobic001G484000 Sobic002G053900--Sobic001G046800 Sobic009G072800 Sobic009G072800 Sobic002G053900--Sobic009G072800 Sobic002G053900--Sobic009G008800 Sobic002G053900--Sobic010G106700 Sobic002G053900--Sobic010G047600 Sobic002G053900--Sobic001G484000 Sobic001G190500 Sobic001G190500 Sobic002G053900--Sobic001G190500 Sobic009G215000 Sobic009G215000 Sobic002G053900--Sobic009G215000 Sobic002G053900--Sobic003G239100 Sobic003G321400--Sobic003G269100 Sobic003G321400--Sobic003G115200 Sobic003G321400--Sobic009G221800 Sobic003G321400--Sobic010G047600 Sobic003G321400--Sobic003G000200 Sobic003G321400--Sobic003G078900 Sobic003G321400--Sobic001G261460 Sobic003G321400--Sobic001G264400 Sobic003G321400--Sobic001G099600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.