Gene annotation
Transcriptome id Sobic.001G314000.1
Synonym Sb01g030530, RCI3A, RCI3
Functional annotation peroxidase precursor, putative, expressed
UniProt C5WUE5
Pfam PF00141
Panther DB PTHR31235
NCBI CDD -
KEGG Orthology K00430; peroxidase
Gene Ontology GO:0006979; response to oxidative stress GO:0004601peroxidase activity


Orthologs (automatic annotation)
TAIR AT1G05260 : Peroxidase superfamily protein
RAP-DB (Rice) LOC_Os10g39170.1 : peroxidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a048553 , Zm00025a025893 , Zm00025a049143 , Zm00025a003157 , Zm00025a044846
Brachypodium KQJ86402 , KQJ86398 , KQJ97598 , KQK08234 , KQK23931 , KQK14659 , KQK14658
Barley HORVU4Hr1G084920.8 , HORVU4Hr1G084920.1 , HORVU4Hr1G084920.9 , HORVU4Hr1G084920.3 , HORVU4Hr1G084920.2 , HORVU4Hr1G084920.5 , HORVU4Hr1G084920.4 , HORVU4Hr1G084920.7 , HORVU4Hr1G084920.6
Wheat TraesCS1B02G115900 , TraesCS4D02G233900 , TraesCS5A02G516300 , TraesCS4A02G076600 , TraesCS4B02G347700 , TraesCS1D02G203700 , TraesCS1B02G214900 , TraesCS1D02G096400 , TraesCS5B02G103300 , TraesCS4D02G342600 , TraesCS1A02G200200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G183300 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.009G079900 endoglucanase precursor, putative, expressed -
3 Sobic.001G514300 Glutathione S-transferase("PubMedID : 26759170,PubMedID : 24597475")@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.003G426200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
6 Sobic.002G391400 peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.005G052700 ZOS11-01 - C2H2 zinc finger protein, expressed -
8 Sobic.002G334000 CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
9 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
10 Sobic.005G231300 thaumatin, putative, expressed -
11 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
12 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
13 Sobic.003G255600 expressed protein -
14 Sobic.006G201000 WRKY37, expressed -
15 Sobic.010G191700 cytochrome P450, putative, expressed -
16 Sobic.001G471800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed -
17 Sobic.007G192000 ACR5, putative, expressed -
18 Sobic.002G115600 membrane protein, putative, expressed -
19 Sobic.002G111900 receptor-like kinase, putative, expressed -
20 Sobic.009G106500 PMR5, putative, expressed -


Gene co-expression network
sample Sobic001G314000 Sobic001G314000 Sobic003G183300 Sobic003G183300 Sobic001G314000--Sobic003G183300 Sobic009G079900 Sobic009G079900 Sobic001G314000--Sobic009G079900 Sobic001G514300 Sobic001G514300 Sobic001G314000--Sobic001G514300 Sobic003G426200 Sobic003G426200 Sobic001G314000--Sobic003G426200 Sobic007G206800 Sobic007G206800 Sobic001G314000--Sobic007G206800 Sobic002G391400 Sobic002G391400 Sobic001G314000--Sobic002G391400 Sobic005G052700 Sobic005G052700 Sobic001G314000--Sobic005G052700 Sobic002G334000 Sobic002G334000 Sobic001G314000--Sobic002G334000 Sobic006G205700 Sobic006G205700 Sobic001G314000--Sobic006G205700 Sobic004G271800 Sobic004G271800 Sobic003G183300--Sobic004G271800 Sobic002G146000 Sobic002G146000 Sobic003G183300--Sobic002G146000 Sobic003G000100 Sobic003G000100 Sobic003G183300--Sobic003G000100 Sobic010G028100 Sobic010G028100 Sobic003G183300--Sobic010G028100 Sobic006G003100 Sobic006G003100 Sobic003G183300--Sobic006G003100 Sobic006G092700 Sobic006G092700 Sobic003G183300--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic003G183300--Sobic006G135300 Sobic008G135300 Sobic008G135300 Sobic003G183300--Sobic008G135300 Sobic010G070400 Sobic010G070400 Sobic003G183300--Sobic010G070400 Sobic009G060700 Sobic009G060700 Sobic009G079900--Sobic009G060700 Sobic007G020700 Sobic007G020700 Sobic009G079900--Sobic007G020700 Sobic009G079900--Sobic005G052700 Sobic002G029600 Sobic002G029600 Sobic009G079900--Sobic002G029600 Sobic003G079100 Sobic003G079100 Sobic009G079900--Sobic003G079100 Sobic010G213600 Sobic010G213600 Sobic009G079900--Sobic010G213600 Sobic004G008600 Sobic004G008600 Sobic009G079900--Sobic004G008600 Sobic001G274400 Sobic001G274400 Sobic009G079900--Sobic001G274400 Sobic006G009700 Sobic006G009700 Sobic009G079900--Sobic006G009700 Sobic005G231300 Sobic005G231300 Sobic001G514300--Sobic005G231300 Sobic008G099100 Sobic008G099100 Sobic001G514300--Sobic008G099100 Sobic003G083600 Sobic003G083600 Sobic001G514300--Sobic003G083600 Sobic001G514300--Sobic001G314000 Sobic001G514300--Sobic009G079900 Sobic008G077300 Sobic008G077300 Sobic001G514300--Sobic008G077300 Sobic001G514300--Sobic008G135300 Sobic003G151900 Sobic003G151900 Sobic001G514300--Sobic003G151900 Sobic003G269100 Sobic003G269100 Sobic001G514300--Sobic003G269100 Sobic003G426200--Sobic006G205700 Sobic003G426200--Sobic002G391400 Sobic008G022100 Sobic008G022100 Sobic003G426200--Sobic008G022100 Sobic003G167300 Sobic003G167300 Sobic003G426200--Sobic003G167300 Sobic003G426200--Sobic007G206800 Sobic002G115600 Sobic002G115600 Sobic003G426200--Sobic002G115600 Sobic010G241900 Sobic010G241900 Sobic003G426200--Sobic010G241900 Sobic007G220400 Sobic007G220400 Sobic003G426200--Sobic007G220400 Sobic009G259800 Sobic009G259800 Sobic003G426200--Sobic009G259800 Sobic007G206800--Sobic002G391400 Sobic007G206800--Sobic002G334000 Sobic007G206800--Sobic007G220400 Sobic007G206800--Sobic010G241900 Sobic010G191700 Sobic010G191700 Sobic007G206800--Sobic010G191700 Sobic007G206800--Sobic006G205700 Sobic005G080600 Sobic005G080600 Sobic007G206800--Sobic005G080600 Sobic002G111900 Sobic002G111900 Sobic007G206800--Sobic002G111900 Sobic002G392100 Sobic002G392100 Sobic007G206800--Sobic002G392100 Sobic002G391400--Sobic007G206800 Sobic002G391400--Sobic010G241900 Sobic002G391400--Sobic006G205700 Sobic002G391400--Sobic010G191700 Sobic002G391400--Sobic007G220400 Sobic002G391400--Sobic002G334000 Sobic002G391400--Sobic002G392100 Sobic002G391400--Sobic002G111900 Sobic010G191600 Sobic010G191600 Sobic002G391400--Sobic010G191600 Sobic005G052700--Sobic002G115600 Sobic007G090600 Sobic007G090600 Sobic005G052700--Sobic007G090600 Sobic003G215300 Sobic003G215300 Sobic005G052700--Sobic003G215300 Sobic005G052700--Sobic002G391400 Sobic005G052700--Sobic010G241900 Sobic005G052700--Sobic006G205700 Sobic004G014600 Sobic004G014600 Sobic005G052700--Sobic004G014600 Sobic009G058400 Sobic009G058400 Sobic005G052700--Sobic009G058400 Sobic005G216500 Sobic005G216500 Sobic005G052700--Sobic005G216500 Sobic002G334000--Sobic007G206800 Sobic003G046700 Sobic003G046700 Sobic002G334000--Sobic003G046700 Sobic002G334000--Sobic010G191700 Sobic002G334000--Sobic002G391400 Sobic002G334000--Sobic010G241900 Sobic002G334000--Sobic007G220400 Sobic001G238100 Sobic001G238100 Sobic002G334000--Sobic001G238100 Sobic005G226350 Sobic005G226350 Sobic002G334000--Sobic005G226350 Sobic010G128300 Sobic010G128300 Sobic002G334000--Sobic010G128300 Sobic006G205700--Sobic002G391400 Sobic003G441800 Sobic003G441800 Sobic006G205700--Sobic003G441800 Sobic004G106100 Sobic004G106100 Sobic006G205700--Sobic004G106100 Sobic006G205700--Sobic003G167300 Sobic006G205700--Sobic010G241900 Sobic005G046400 Sobic005G046400 Sobic006G205700--Sobic005G046400 Sobic006G205700--Sobic007G206800 Sobic003G441601 Sobic003G441601 Sobic006G205700--Sobic003G441601 Sobic003G095100 Sobic003G095100 Sobic006G205700--Sobic003G095100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.