Gene annotation
Transcriptome id Sobic.005G110600.1
Synonym Sb05g012300
Functional annotation glycosyl hydrolase, putative, expressed
UniProt C5Y263
Pfam PF00704
Panther DB PTHR11177 PTHR11177:SF180
NCBI CDD KOG2806; Chitinase
KEGG Orthology K01183; chitinase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT4G19810 : Glycosyl hydrolase family protein with chitinase insertion domain
RAP-DB (Rice) LOC_Os11g27400.1 : glycosyl hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a029768
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G130700 expressed protein -
2 Sobic.006G062300 Leucine Rich Repeat family protein, expressed -
3 Sobic.004G297950 - -
4 Sobic.001G140800 helix-loop-helix DNA-binding protein, putative, expressed -
5 Sobic.003G419600 disease resistance protein RGA2, putative, expressed -
6 Sobic.010G133932 - -
7 Sobic.010G007000 Leucine Rich Repeat family protein, expressed -
8 Sobic.003G269100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AWPM-19-like membrane family protein, putative, expressed -
9 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
10 Sobic.008G170400 expressed protein -
11 Sobic.004G156900 OsGrx_C8 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
12 Sobic.005G130600 expressed protein -
13 Sobic.007G130900 expressed protein -
14 Sobic.002G064600 expressed protein -
15 Sobic.010G116100 expressed protein -
16 Sobic.005G052500 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
17 Sobic.001G388000 GTPase-activating protein, putative, expressed -
18 Sobic.003G272900 - -
19 Sobic.001G037400 expressed protein -
20 Sobic.003G270400 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic005G110600 Sobic005G110600 Sobic005G130700 Sobic005G130700 Sobic005G110600--Sobic005G130700 Sobic006G062300 Sobic006G062300 Sobic005G110600--Sobic006G062300 Sobic004G297950 Sobic004G297950 Sobic005G110600--Sobic004G297950 Sobic001G140800 Sobic001G140800 Sobic005G110600--Sobic001G140800 Sobic003G419600 Sobic003G419600 Sobic005G110600--Sobic003G419600 Sobic010G133932 Sobic010G133932 Sobic005G110600--Sobic010G133932 Sobic010G007000 Sobic010G007000 Sobic005G110600--Sobic010G007000 Sobic003G269100 Sobic003G269100 Sobic005G110600--Sobic003G269100 Sobic001G484000 Sobic001G484000 Sobic005G110600--Sobic001G484000 Sobic005G130700--Sobic005G110600 Sobic005G130700--Sobic006G062300 Sobic010G116100 Sobic010G116100 Sobic005G130700--Sobic010G116100 Sobic005G130700--Sobic003G419600 Sobic005G130700--Sobic001G140800 Sobic003G277200 Sobic003G277200 Sobic005G130700--Sobic003G277200 Sobic009G134000 Sobic009G134000 Sobic005G130700--Sobic009G134000 Sobic006G245600 Sobic006G245600 Sobic005G130700--Sobic006G245600 Sobic003G272900 Sobic003G272900 Sobic005G130700--Sobic003G272900 Sobic006G062300--Sobic005G130700 Sobic006G062300--Sobic005G110600 Sobic006G062300--Sobic010G116100 Sobic006G062300--Sobic003G419600 Sobic006G062300--Sobic010G007000 Sobic006G062300--Sobic001G140800 Sobic008G170400 Sobic008G170400 Sobic006G062300--Sobic008G170400 Sobic006G062300--Sobic004G297950 Sobic007G202100 Sobic007G202100 Sobic006G062300--Sobic007G202100 Sobic004G297950--Sobic003G269100 Sobic005G130600 Sobic005G130600 Sobic004G297950--Sobic005G130600 Sobic003G321400 Sobic003G321400 Sobic004G297950--Sobic003G321400 Sobic004G297950--Sobic005G110600 Sobic005G047100 Sobic005G047100 Sobic004G297950--Sobic005G047100 Sobic001G099600 Sobic001G099600 Sobic004G297950--Sobic001G099600 Sobic001G264400 Sobic001G264400 Sobic004G297950--Sobic001G264400 Sobic005G052500 Sobic005G052500 Sobic004G297950--Sobic005G052500 Sobic004G297950--Sobic001G484000 Sobic001G140800--Sobic005G110600 Sobic001G388000 Sobic001G388000 Sobic001G140800--Sobic001G388000 Sobic005G145100 Sobic005G145100 Sobic001G140800--Sobic005G145100 Sobic001G140800--Sobic010G133932 Sobic005G087400 Sobic005G087400 Sobic001G140800--Sobic005G087400 Sobic001G129600 Sobic001G129600 Sobic001G140800--Sobic001G129600 Sobic001G140800--Sobic005G130700 Sobic001G140800--Sobic001G484000 Sobic001G140800--Sobic006G062300 Sobic003G419600--Sobic005G130700 Sobic003G419600--Sobic010G007000 Sobic003G419600--Sobic005G110600 Sobic003G419600--Sobic006G062300 Sobic001G037400 Sobic001G037400 Sobic003G419600--Sobic001G037400 Sobic003G419600--Sobic003G277200 Sobic007G111700 Sobic007G111700 Sobic003G419600--Sobic007G111700 Sobic003G006100 Sobic003G006100 Sobic003G419600--Sobic003G006100 Sobic003G419600--Sobic010G116100 Sobic010G133932--Sobic001G388000 Sobic010G133932--Sobic001G140800 Sobic010G133932--Sobic005G110600 Sobic005G112000 Sobic005G112000 Sobic010G133932--Sobic005G112000 Sobic010G133932--Sobic005G145100 Sobic003G239100 Sobic003G239100 Sobic010G133932--Sobic003G239100 Sobic004G266700 Sobic004G266700 Sobic010G133932--Sobic004G266700 Sobic010G133932--Sobic001G484000 Sobic003G082700 Sobic003G082700 Sobic010G133932--Sobic003G082700 Sobic002G064600 Sobic002G064600 Sobic010G007000--Sobic002G064600 Sobic010G007000--Sobic003G419600 Sobic010G007000--Sobic005G110600 Sobic010G007000--Sobic008G170400 Sobic010G007000--Sobic006G062300 Sobic003G296500 Sobic003G296500 Sobic010G007000--Sobic003G296500 Sobic010G007000--Sobic005G112000 Sobic001G402400 Sobic001G402400 Sobic010G007000--Sobic001G402400 Sobic002G062600 Sobic002G062600 Sobic010G007000--Sobic002G062600 Sobic003G269100--Sobic003G321400 Sobic003G269100--Sobic001G099600 Sobic003G269100--Sobic004G297950 Sobic003G115200 Sobic003G115200 Sobic003G269100--Sobic003G115200 Sobic010G047600 Sobic010G047600 Sobic003G269100--Sobic010G047600 Sobic001G261460 Sobic001G261460 Sobic003G269100--Sobic001G261460 Sobic003G269100--Sobic001G264400 Sobic003G269100--Sobic001G484000 Sobic001G046800 Sobic001G046800 Sobic003G269100--Sobic001G046800 Sobic001G484000--Sobic005G052500 Sobic001G484000--Sobic001G046800 Sobic003G352700 Sobic003G352700 Sobic001G484000--Sobic003G352700 Sobic002G053900 Sobic002G053900 Sobic001G484000--Sobic002G053900 Sobic001G484000--Sobic003G269100 Sobic001G484000--Sobic003G082700 Sobic002G094600 Sobic002G094600 Sobic001G484000--Sobic002G094600 Sobic009G008800 Sobic009G008800 Sobic001G484000--Sobic009G008800 Sobic001G484000--Sobic003G239100
Octagon: transcription factors


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