Gene annotation
Transcriptome id Sobic.001G140800.1
Synonym Sb01g012250
Functional annotation helix-loop-helix DNA-binding protein, putative, expressed
UniProt C5WPR0
Pfam PF00010
Panther DB PTHR31945 PTHR31945:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37850 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g46860.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a007506 , Zm00025a007497 , Zm00025a055348 , Zm00025a011279 , Zm00025a056111
Brachypodium KQK13832 , KQK13833
Barley HORVU4Hr1G078910.2 , HORVU4Hr1G003210.2 , HORVU4Hr1G003210.3 , HORVU4Hr1G003210.1 , HORVU4Hr1G078880.1 , HORVU4Hr1G078880.2 , HORVU5Hr1G002090.8 , HORVU5Hr1G002090.9 , HORVU5Hr1G002090.2 , HORVU5Hr1G002090.3 , HORVU5Hr1G002090.1 , HORVU5Hr1G002090.6 , HORVU5Hr1G002090.7 , HORVU5Hr1G002090.4 , HORVU5Hr1G002090.5 , HORVU0Hr1G014300.8 , HORVU0Hr1G014300.1 , HORVU0Hr1G014300.2 , HORVU0Hr1G014300.3 , HORVU0Hr1G014300.4 , HORVU0Hr1G014300.5 , HORVU0Hr1G014300.6 , HORVU0Hr1G014300.7 , HORVU5Hr1G002090.10 , HORVU5Hr1G002090.11 , HORVU5Hr1G002090.12 , HORVU4Hr1G078910.3 , HORVU4Hr1G003340.1 , HORVU4Hr1G003340.2 , HORVU4Hr1G003340.3 , HORVU4Hr1G003340.4 , HORVU4Hr1G003340.5 , HORVU4Hr1G003340.6 , HORVU4Hr1G003340.7 , HORVU4Hr1G003340.8 , HORVU4Hr1G078910.1 , HORVU4Hr1G078910.4
Wheat TraesCS4B02G020900 , TraesCSU02G075100 , TraesCS4A02G292700 , TraesCS5B02G518500 , TraesCS4B02G308100 , TraesCS4D02G306300 , TraesCS5B02G518400 , TraesCS4D02G018800 , TraesCS4D02G018800 , TraesCS4B02G021500 , TraesCS4B02G308300 , TraesCS4D02G306400 , TraesCS4A02G292800 , TraesCS4D02G019200 , TraesCS5D02G517900 , TraesCS4B02G020700 , TraesCS4A02G408800 , TraesCS4D02G019100 , TraesCS4D02G018700 , TraesCS4B02G021200 , TraesCS4B02G021200 , TraesCS4A02G354100 , TraesCSU02G075200 , TraesCSU02G075200 , TraesCSU02G075200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110600 glycosyl hydrolase, putative, expressed K01183: chitinase
2 Sobic.001G388000 GTPase-activating protein, putative, expressed -
3 Sobic.005G145100 phospholipase A2, putative, expressed -
4 Sobic.010G133932 - -
5 Sobic.005G087400 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
6 Sobic.001G129600 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
7 Sobic.005G130700 expressed protein -
8 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
9 Sobic.006G062300 Leucine Rich Repeat family protein, expressed -
10 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
11 Sobic.002G028500 app1, putative, expressed -
12 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
13 Sobic.003G006100 Leucine Rich Repeat family protein, expressed -
14 Sobic.005G130600 expressed protein -
15 Sobic.006G096500 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
16 Sobic.005G052500 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
17 Sobic.003G419600 disease resistance protein RGA2, putative, expressed -
18 Sobic.003G272900 - -
19 Sobic.001G140400 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
20 Sobic.001G208600 receptor kinase like protein, putative, expressed -


Gene co-expression network
sample Sobic001G140800 Sobic001G140800 Sobic005G110600 Sobic005G110600 Sobic001G140800--Sobic005G110600 Sobic001G388000 Sobic001G388000 Sobic001G140800--Sobic001G388000 Sobic005G145100 Sobic005G145100 Sobic001G140800--Sobic005G145100 Sobic010G133932 Sobic010G133932 Sobic001G140800--Sobic010G133932 Sobic005G087400 Sobic005G087400 Sobic001G140800--Sobic005G087400 Sobic001G129600 Sobic001G129600 Sobic001G140800--Sobic001G129600 Sobic005G130700 Sobic005G130700 Sobic001G140800--Sobic005G130700 Sobic001G484000 Sobic001G484000 Sobic001G140800--Sobic001G484000 Sobic006G062300 Sobic006G062300 Sobic001G140800--Sobic006G062300 Sobic005G110600--Sobic005G130700 Sobic005G110600--Sobic006G062300 Sobic004G297950 Sobic004G297950 Sobic005G110600--Sobic004G297950 Sobic005G110600--Sobic001G140800 Sobic003G419600 Sobic003G419600 Sobic005G110600--Sobic003G419600 Sobic005G110600--Sobic010G133932 Sobic010G007000 Sobic010G007000 Sobic005G110600--Sobic010G007000 Sobic003G269100 Sobic003G269100 Sobic005G110600--Sobic003G269100 Sobic005G110600--Sobic001G484000 Sobic001G388000--Sobic010G133932 Sobic001G388000--Sobic001G140800 Sobic001G388000--Sobic005G145100 Sobic005G112000 Sobic005G112000 Sobic001G388000--Sobic005G112000 Sobic003G366300 Sobic003G366300 Sobic001G388000--Sobic003G366300 Sobic001G388000--Sobic005G110600 Sobic004G290300 Sobic004G290300 Sobic001G388000--Sobic004G290300 Sobic003G239100 Sobic003G239100 Sobic001G388000--Sobic003G239100 Sobic001G388000--Sobic001G484000 Sobic002G028500 Sobic002G028500 Sobic005G145100--Sobic002G028500 Sobic001G208600 Sobic001G208600 Sobic005G145100--Sobic001G208600 Sobic005G145100--Sobic003G239100 Sobic005G145100--Sobic004G290300 Sobic005G145100--Sobic001G129600 Sobic004G266700 Sobic004G266700 Sobic005G145100--Sobic004G266700 Sobic005G145100--Sobic001G140800 Sobic005G145100--Sobic001G388000 Sobic001G144800 Sobic001G144800 Sobic005G145100--Sobic001G144800 Sobic010G133932--Sobic001G388000 Sobic010G133932--Sobic001G140800 Sobic010G133932--Sobic005G110600 Sobic010G133932--Sobic005G112000 Sobic010G133932--Sobic005G145100 Sobic010G133932--Sobic003G239100 Sobic010G133932--Sobic004G266700 Sobic010G133932--Sobic001G484000 Sobic003G082700 Sobic003G082700 Sobic010G133932--Sobic003G082700 Sobic005G087400--Sobic001G140800 Sobic004G150800 Sobic004G150800 Sobic005G087400--Sobic004G150800 Sobic006G096500 Sobic006G096500 Sobic005G087400--Sobic006G096500 Sobic005G087400--Sobic001G388000 Sobic005G087400--Sobic001G129600 Sobic003G272900 Sobic003G272900 Sobic005G087400--Sobic003G272900 Sobic005G087400--Sobic005G145100 Sobic005G087400--Sobic005G110600 Sobic003G006100 Sobic003G006100 Sobic005G087400--Sobic003G006100 Sobic001G129600--Sobic002G028500 Sobic001G129600--Sobic005G145100 Sobic001G129600--Sobic004G290300 Sobic001G129600--Sobic001G140800 Sobic001G129600--Sobic001G388000 Sobic001G129600--Sobic010G133932 Sobic001G129600--Sobic004G266700 Sobic001G129600--Sobic005G087400 Sobic001G129600--Sobic003G239100 Sobic005G130700--Sobic005G110600 Sobic005G130700--Sobic006G062300 Sobic010G116100 Sobic010G116100 Sobic005G130700--Sobic010G116100 Sobic005G130700--Sobic003G419600 Sobic005G130700--Sobic001G140800 Sobic003G277200 Sobic003G277200 Sobic005G130700--Sobic003G277200 Sobic009G134000 Sobic009G134000 Sobic005G130700--Sobic009G134000 Sobic006G245600 Sobic006G245600 Sobic005G130700--Sobic006G245600 Sobic005G130700--Sobic003G272900 Sobic005G052500 Sobic005G052500 Sobic001G484000--Sobic005G052500 Sobic001G046800 Sobic001G046800 Sobic001G484000--Sobic001G046800 Sobic003G352700 Sobic003G352700 Sobic001G484000--Sobic003G352700 Sobic002G053900 Sobic002G053900 Sobic001G484000--Sobic002G053900 Sobic001G484000--Sobic003G269100 Sobic001G484000--Sobic003G082700 Sobic002G094600 Sobic002G094600 Sobic001G484000--Sobic002G094600 Sobic009G008800 Sobic009G008800 Sobic001G484000--Sobic009G008800 Sobic001G484000--Sobic003G239100 Sobic006G062300--Sobic005G130700 Sobic006G062300--Sobic005G110600 Sobic006G062300--Sobic010G116100 Sobic006G062300--Sobic003G419600 Sobic006G062300--Sobic010G007000 Sobic006G062300--Sobic001G140800 Sobic008G170400 Sobic008G170400 Sobic006G062300--Sobic008G170400 Sobic006G062300--Sobic004G297950 Sobic007G202100 Sobic007G202100 Sobic006G062300--Sobic007G202100
Octagon: transcription factors


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