Gene annotation
Transcriptome id Sobic.001G129600.1
Synonym Sb01g011360
Functional annotation nucleobase-ascorbate transporter, putative, expressed
UniProt C5WNY3
Pfam PF00860
Panther DB PTHR11119 PTHR11119:SF45
NCBI CDD -
KEGG Orthology K14611; SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT5G62890 : Xanthine/uracil permease family protein
RAP-DB (Rice) LOC_Os03g48810.1 : nucleobase-ascorbate transporter, putative, expressed
MaizeGDB (Corn) Zm00025a046835 , Zm00025a007680
Brachypodium KQK13698
Barley HORVU4Hr1G005530.19 , HORVU4Hr1G005530.15 , HORVU4Hr1G005530.14 , HORVU4Hr1G005530.16 , HORVU4Hr1G005530.11 , HORVU4Hr1G005530.10 , HORVU4Hr1G005530.13 , HORVU4Hr1G005530.12 , HORVU4Hr1G005530.9 , HORVU4Hr1G005530.1 , HORVU4Hr1G005530.2 , HORVU4Hr1G005530.7 , HORVU4Hr1G005530.6 , HORVU4Hr1G005530.28 , HORVU4Hr1G005530.20 , HORVU4Hr1G005530.21 , HORVU4Hr1G005530.22 , HORVU4Hr1G005530.24 , HORVU4Hr1G005530.25 , HORVU4Hr1G005530.26 , HORVU4Hr1G005530.27
Wheat TraesCS4A02G278800 , TraesCS4D02G032600 , TraesCS4B02G034100 , TraesCS3B02G281700
Populus -


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cDNA sequences
Sobic.001G129600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G028500 app1, putative, expressed -
2 Sobic.005G145100 phospholipase A2, putative, expressed -
3 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
4 Sobic.001G140800 helix-loop-helix DNA-binding protein, putative, expressed -
5 Sobic.001G388000 GTPase-activating protein, putative, expressed -
6 Sobic.010G133932 - -
7 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.005G087400 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
9 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
10 Sobic.002G050100 LTPL100 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.001G144800 LTPL72 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.K009800 chloroplast unusual positioning protein, putative, expressed -
13 Sobic.001G208600 receptor kinase like protein, putative, expressed -
14 Sobic.003G341500 lignin modification(PubMedID : 28529519)@laccase precursor protein, putative, expressed K05909: laccase
15 Sobic.005G122800 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
16 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
17 Sobic.005G056201 - -
18 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.007G159600 expressed protein -
20 Sobic.001G140300 glycosyl hydrolase family 10 protein, putative, expressed -


Gene co-expression network
sample Sobic001G129600 Sobic001G129600 Sobic002G028500 Sobic002G028500 Sobic001G129600--Sobic002G028500 Sobic005G145100 Sobic005G145100 Sobic001G129600--Sobic005G145100 Sobic004G290300 Sobic004G290300 Sobic001G129600--Sobic004G290300 Sobic001G140800 Sobic001G140800 Sobic001G129600--Sobic001G140800 Sobic001G388000 Sobic001G388000 Sobic001G129600--Sobic001G388000 Sobic010G133932 Sobic010G133932 Sobic001G129600--Sobic010G133932 Sobic004G266700 Sobic004G266700 Sobic001G129600--Sobic004G266700 Sobic005G087400 Sobic005G087400 Sobic001G129600--Sobic005G087400 Sobic003G239100 Sobic003G239100 Sobic001G129600--Sobic003G239100 Sobic002G028500--Sobic005G145100 Sobic002G028500--Sobic001G129600 Sobic001G144800 Sobic001G144800 Sobic002G028500--Sobic001G144800 Sobic002G028500--Sobic004G290300 Sobic002G028500--Sobic004G266700 Sobic001G208600 Sobic001G208600 Sobic002G028500--Sobic001G208600 Sobic002G050100 Sobic002G050100 Sobic002G028500--Sobic002G050100 Sobic002G028500--Sobic001G140800 Sobic002G028500--Sobic003G239100 Sobic005G145100--Sobic002G028500 Sobic005G145100--Sobic001G208600 Sobic005G145100--Sobic003G239100 Sobic005G145100--Sobic004G290300 Sobic005G145100--Sobic001G129600 Sobic005G145100--Sobic004G266700 Sobic005G145100--Sobic001G140800 Sobic005G145100--Sobic001G388000 Sobic005G145100--Sobic001G144800 Sobic004G290300--Sobic005G145100 Sobic004G290300--Sobic001G129600 Sobic004G290300--Sobic002G028500 Sobic004G290300--Sobic001G140800 Sobic004G290300--Sobic001G388000 Sobic004G290300--Sobic001G208600 Sobic004G290300--Sobic004G266700 Sobic001G343400 Sobic001G343400 Sobic004G290300--Sobic001G343400 Sobic005G112000 Sobic005G112000 Sobic004G290300--Sobic005G112000 Sobic005G110600 Sobic005G110600 Sobic001G140800--Sobic005G110600 Sobic001G140800--Sobic001G388000 Sobic001G140800--Sobic005G145100 Sobic001G140800--Sobic010G133932 Sobic001G140800--Sobic005G087400 Sobic001G140800--Sobic001G129600 Sobic005G130700 Sobic005G130700 Sobic001G140800--Sobic005G130700 Sobic001G484000 Sobic001G484000 Sobic001G140800--Sobic001G484000 Sobic006G062300 Sobic006G062300 Sobic001G140800--Sobic006G062300 Sobic001G388000--Sobic010G133932 Sobic001G388000--Sobic001G140800 Sobic001G388000--Sobic005G145100 Sobic001G388000--Sobic005G112000 Sobic003G366300 Sobic003G366300 Sobic001G388000--Sobic003G366300 Sobic001G388000--Sobic005G110600 Sobic001G388000--Sobic004G290300 Sobic001G388000--Sobic003G239100 Sobic001G388000--Sobic001G484000 Sobic010G133932--Sobic001G388000 Sobic010G133932--Sobic001G140800 Sobic010G133932--Sobic005G110600 Sobic010G133932--Sobic005G112000 Sobic010G133932--Sobic005G145100 Sobic010G133932--Sobic003G239100 Sobic010G133932--Sobic004G266700 Sobic010G133932--Sobic001G484000 Sobic003G082700 Sobic003G082700 Sobic010G133932--Sobic003G082700 Sobic005G127200 Sobic005G127200 Sobic004G266700--Sobic005G127200 Sobic003G341500 Sobic003G341500 Sobic004G266700--Sobic003G341500 Sobic004G266700--Sobic001G144800 Sobic001G068500 Sobic001G068500 Sobic004G266700--Sobic001G068500 Sobic010G093300 Sobic010G093300 Sobic004G266700--Sobic010G093300 Sobic009G008800 Sobic009G008800 Sobic004G266700--Sobic009G008800 Sobic003G368100 Sobic003G368100 Sobic004G266700--Sobic003G368100 Sobic004G266700--Sobic003G239100 Sobic001G059600 Sobic001G059600 Sobic004G266700--Sobic001G059600 Sobic005G087400--Sobic001G140800 Sobic004G150800 Sobic004G150800 Sobic005G087400--Sobic004G150800 Sobic006G096500 Sobic006G096500 Sobic005G087400--Sobic006G096500 Sobic005G087400--Sobic001G388000 Sobic005G087400--Sobic001G129600 Sobic003G272900 Sobic003G272900 Sobic005G087400--Sobic003G272900 Sobic005G087400--Sobic005G145100 Sobic005G087400--Sobic005G110600 Sobic003G006100 Sobic003G006100 Sobic005G087400--Sobic003G006100 Sobic003G239100--Sobic003G082700 Sobic003G239100--Sobic009G008800 Sobic003G352700 Sobic003G352700 Sobic003G239100--Sobic003G352700 Sobic003G239100--Sobic005G145100 Sobic003G239100--Sobic004G266700 Sobic003G239100--Sobic005G127200 Sobic002G053900 Sobic002G053900 Sobic003G239100--Sobic002G053900 Sobic002G030800 Sobic002G030800 Sobic003G239100--Sobic002G030800 Sobic003G239100--Sobic001G484000
Octagon: transcription factors


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