Gene annotation
Transcriptome id Sobic.002G028500.1
Synonym Sb02g002540
Functional annotation app1, putative, expressed
UniProt A0A1W0W232
Pfam -
Panther DB PTHR33088 PTHR33088:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09530 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os07g04950.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G145100 phospholipase A2, putative, expressed -
2 Sobic.001G129600 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
3 Sobic.001G144800 LTPL72 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
5 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
6 Sobic.001G208600 receptor kinase like protein, putative, expressed -
7 Sobic.002G050100 LTPL100 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.001G140800 helix-loop-helix DNA-binding protein, putative, expressed -
9 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
10 Sobic.002G053900 Cupin domain containing protein, expressed -
11 Sobic.003G341500 lignin modification(PubMedID : 28529519)@laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.003G206700 heavy metal-associated domain containing protein, expressed -
13 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
14 Sobic.001G046800 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.009G253300 Myb family transcription factor(PubMedID : 26320239)@Myb transcription factor, putative, expressed -
16 Sobic.003G062000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
17 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
19 Sobic.005G087400 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
20 Sobic.003G443200 xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase


Gene co-expression network
sample Sobic002G028500 Sobic002G028500 Sobic005G145100 Sobic005G145100 Sobic002G028500--Sobic005G145100 Sobic001G129600 Sobic001G129600 Sobic002G028500--Sobic001G129600 Sobic001G144800 Sobic001G144800 Sobic002G028500--Sobic001G144800 Sobic004G290300 Sobic004G290300 Sobic002G028500--Sobic004G290300 Sobic004G266700 Sobic004G266700 Sobic002G028500--Sobic004G266700 Sobic001G208600 Sobic001G208600 Sobic002G028500--Sobic001G208600 Sobic002G050100 Sobic002G050100 Sobic002G028500--Sobic002G050100 Sobic001G140800 Sobic001G140800 Sobic002G028500--Sobic001G140800 Sobic003G239100 Sobic003G239100 Sobic002G028500--Sobic003G239100 Sobic005G145100--Sobic002G028500 Sobic005G145100--Sobic001G208600 Sobic005G145100--Sobic003G239100 Sobic005G145100--Sobic004G290300 Sobic005G145100--Sobic001G129600 Sobic005G145100--Sobic004G266700 Sobic005G145100--Sobic001G140800 Sobic001G388000 Sobic001G388000 Sobic005G145100--Sobic001G388000 Sobic005G145100--Sobic001G144800 Sobic001G129600--Sobic002G028500 Sobic001G129600--Sobic005G145100 Sobic001G129600--Sobic004G290300 Sobic001G129600--Sobic001G140800 Sobic001G129600--Sobic001G388000 Sobic010G133932 Sobic010G133932 Sobic001G129600--Sobic010G133932 Sobic001G129600--Sobic004G266700 Sobic005G087400 Sobic005G087400 Sobic001G129600--Sobic005G087400 Sobic001G129600--Sobic003G239100 Sobic003G341500 Sobic003G341500 Sobic001G144800--Sobic003G341500 Sobic001G144800--Sobic004G266700 Sobic003G206700 Sobic003G206700 Sobic001G144800--Sobic003G206700 Sobic001G059500 Sobic001G059500 Sobic001G144800--Sobic001G059500 Sobic001G068500 Sobic001G068500 Sobic001G144800--Sobic001G068500 Sobic003G368100 Sobic003G368100 Sobic001G144800--Sobic003G368100 Sobic009G008800 Sobic009G008800 Sobic001G144800--Sobic009G008800 Sobic001G059600 Sobic001G059600 Sobic001G144800--Sobic001G059600 Sobic005G127200 Sobic005G127200 Sobic001G144800--Sobic005G127200 Sobic004G290300--Sobic005G145100 Sobic004G290300--Sobic001G129600 Sobic004G290300--Sobic002G028500 Sobic004G290300--Sobic001G140800 Sobic004G290300--Sobic001G388000 Sobic004G290300--Sobic001G208600 Sobic004G290300--Sobic004G266700 Sobic001G343400 Sobic001G343400 Sobic004G290300--Sobic001G343400 Sobic005G112000 Sobic005G112000 Sobic004G290300--Sobic005G112000 Sobic004G266700--Sobic005G127200 Sobic004G266700--Sobic003G341500 Sobic004G266700--Sobic001G144800 Sobic004G266700--Sobic001G068500 Sobic010G093300 Sobic010G093300 Sobic004G266700--Sobic010G093300 Sobic004G266700--Sobic009G008800 Sobic004G266700--Sobic003G368100 Sobic004G266700--Sobic003G239100 Sobic004G266700--Sobic001G059600 Sobic001G208600--Sobic005G145100 Sobic003G099166 Sobic003G099166 Sobic001G208600--Sobic003G099166 Sobic006G075000 Sobic006G075000 Sobic001G208600--Sobic006G075000 Sobic001G208600--Sobic003G239100 Sobic009G017500 Sobic009G017500 Sobic001G208600--Sobic009G017500 Sobic002G053900 Sobic002G053900 Sobic001G208600--Sobic002G053900 Sobic001G334900 Sobic001G334900 Sobic001G208600--Sobic001G334900 Sobic002G030800 Sobic002G030800 Sobic001G208600--Sobic002G030800 Sobic003G352700 Sobic003G352700 Sobic001G208600--Sobic003G352700 Sobic002G050100--Sobic003G341500 Sobic002G050100--Sobic004G266700 Sobic002G050100--Sobic001G144800 Sobic005G122800 Sobic005G122800 Sobic002G050100--Sobic005G122800 Sobic002G050100--Sobic009G008800 Sobic003G443200 Sobic003G443200 Sobic002G050100--Sobic003G443200 Sobic002G050100--Sobic005G127200 Sobic002G050100--Sobic001G068500 Sobic002G050100--Sobic003G239100 Sobic005G110600 Sobic005G110600 Sobic001G140800--Sobic005G110600 Sobic001G140800--Sobic001G388000 Sobic001G140800--Sobic005G145100 Sobic001G140800--Sobic010G133932 Sobic001G140800--Sobic005G087400 Sobic001G140800--Sobic001G129600 Sobic005G130700 Sobic005G130700 Sobic001G140800--Sobic005G130700 Sobic001G484000 Sobic001G484000 Sobic001G140800--Sobic001G484000 Sobic006G062300 Sobic006G062300 Sobic001G140800--Sobic006G062300 Sobic003G082700 Sobic003G082700 Sobic003G239100--Sobic003G082700 Sobic003G239100--Sobic009G008800 Sobic003G239100--Sobic003G352700 Sobic003G239100--Sobic005G145100 Sobic003G239100--Sobic004G266700 Sobic003G239100--Sobic005G127200 Sobic003G239100--Sobic002G053900 Sobic003G239100--Sobic002G030800 Sobic003G239100--Sobic001G484000
Octagon: transcription factors


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