Gene annotation
Transcriptome id Sobic.003G443200.1
Synonym XCP2, Sb03g047290
Functional annotation xylem cysteine proteinase 2 precursor, putative, expressed
UniProt C5XJD5
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF357
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology K16290; xylem cysteine proteinase
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G20850 : xylem cysteine peptidase 2
RAP-DB (Rice) LOC_Os01g73980.1 : xylem cysteine proteinase 2 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a005623 , Zm00025a039049 , Zm00025a015320 , Zm00025a026361 , Zm00025a040960
Brachypodium PNT72102 , PNT72101
Barley HORVU3Hr1G091800.1 , HORVU1Hr1G003940.7 , HORVU2Hr1G121150.1 , HORVU1Hr1G003940.6 , HORVU1Hr1G003940.5 , HORVU1Hr1G003940.4 , HORVU3Hr1G088080.1 , HORVU3Hr1G088080.2
Wheat TraesCS5B02G138300 , TraesCS1A02G027300 , TraesCS3D02G342100 , TraesCS1D02G026500 , TraesCS5A02G138700 , TraesCS1B02G033200 , TraesCS5D02G152400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G122800 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
2 Sobic.002G050100 LTPL100 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.009G253300 Myb family transcription factor(PubMedID : 26320239)@Myb transcription factor, putative, expressed -
4 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
5 Sobic.009G033400 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.005G145100 phospholipase A2, putative, expressed -
7 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
8 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
9 Sobic.007G091900 ATP binding protein, putative, expressed -
10 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
11 Sobic.001G189500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
12 Sobic.001G208600 receptor kinase like protein, putative, expressed -
13 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
14 Sobic.003G341500 lignin modification(PubMedID : 28529519)@laccase precursor protein, putative, expressed K05909: laccase
15 Sobic.002G030800 app1, putative, expressed -
16 Sobic.002G053900 Cupin domain containing protein, expressed -
17 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
18 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
20 Sobic.001G068500 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -


Gene co-expression network
sample Sobic003G443200 Sobic003G443200 Sobic005G122800 Sobic005G122800 Sobic003G443200--Sobic005G122800 Sobic002G050100 Sobic002G050100 Sobic003G443200--Sobic002G050100 Sobic009G253300 Sobic009G253300 Sobic003G443200--Sobic009G253300 Sobic003G239100 Sobic003G239100 Sobic003G443200--Sobic003G239100 Sobic009G033400 Sobic009G033400 Sobic003G443200--Sobic009G033400 Sobic005G145100 Sobic005G145100 Sobic003G443200--Sobic005G145100 Sobic003G082700 Sobic003G082700 Sobic003G443200--Sobic003G082700 Sobic009G008800 Sobic009G008800 Sobic003G443200--Sobic009G008800 Sobic007G091900 Sobic007G091900 Sobic003G443200--Sobic007G091900 Sobic005G122800--Sobic003G443200 Sobic005G122800--Sobic002G050100 Sobic004G266700 Sobic004G266700 Sobic005G122800--Sobic004G266700 Sobic005G127200 Sobic005G127200 Sobic005G122800--Sobic005G127200 Sobic005G122800--Sobic005G145100 Sobic003G341500 Sobic003G341500 Sobic005G122800--Sobic003G341500 Sobic005G122800--Sobic007G091900 Sobic005G122800--Sobic003G239100 Sobic010G133932 Sobic010G133932 Sobic005G122800--Sobic010G133932 Sobic002G050100--Sobic003G341500 Sobic002G050100--Sobic004G266700 Sobic001G144800 Sobic001G144800 Sobic002G050100--Sobic001G144800 Sobic002G050100--Sobic005G122800 Sobic002G050100--Sobic009G008800 Sobic002G050100--Sobic003G443200 Sobic002G050100--Sobic005G127200 Sobic001G068500 Sobic001G068500 Sobic002G050100--Sobic001G068500 Sobic002G050100--Sobic003G239100 Sobic004G147400 Sobic004G147400 Sobic009G253300--Sobic004G147400 Sobic009G253300--Sobic003G443200 Sobic002G053900 Sobic002G053900 Sobic009G253300--Sobic002G053900 Sobic009G253300--Sobic002G050100 Sobic009G253300--Sobic009G033400 Sobic009G072800 Sobic009G072800 Sobic009G253300--Sobic009G072800 Sobic002G028500 Sobic002G028500 Sobic009G253300--Sobic002G028500 Sobic009G253300--Sobic005G145100 Sobic009G253300--Sobic009G008800 Sobic003G239100--Sobic003G082700 Sobic003G239100--Sobic009G008800 Sobic003G352700 Sobic003G352700 Sobic003G239100--Sobic003G352700 Sobic003G239100--Sobic005G145100 Sobic003G239100--Sobic004G266700 Sobic003G239100--Sobic005G127200 Sobic003G239100--Sobic002G053900 Sobic002G030800 Sobic002G030800 Sobic003G239100--Sobic002G030800 Sobic001G484000 Sobic001G484000 Sobic003G239100--Sobic001G484000 Sobic001G334900 Sobic001G334900 Sobic009G033400--Sobic001G334900 Sobic009G033400--Sobic003G443200 Sobic009G033400--Sobic009G253300 Sobic010G228100 Sobic010G228100 Sobic009G033400--Sobic010G228100 Sobic001G345900 Sobic001G345900 Sobic009G033400--Sobic001G345900 Sobic001G012200 Sobic001G012200 Sobic009G033400--Sobic001G012200 Sobic002G347300 Sobic002G347300 Sobic009G033400--Sobic002G347300 Sobic001G012400 Sobic001G012400 Sobic009G033400--Sobic001G012400 Sobic001G012300 Sobic001G012300 Sobic009G033400--Sobic001G012300 Sobic005G145100--Sobic002G028500 Sobic001G208600 Sobic001G208600 Sobic005G145100--Sobic001G208600 Sobic005G145100--Sobic003G239100 Sobic004G290300 Sobic004G290300 Sobic005G145100--Sobic004G290300 Sobic001G129600 Sobic001G129600 Sobic005G145100--Sobic001G129600 Sobic005G145100--Sobic004G266700 Sobic001G140800 Sobic001G140800 Sobic005G145100--Sobic001G140800 Sobic001G388000 Sobic001G388000 Sobic005G145100--Sobic001G388000 Sobic005G145100--Sobic001G144800 Sobic003G082700--Sobic003G352700 Sobic003G082700--Sobic003G239100 Sobic003G082700--Sobic009G008800 Sobic004G047600 Sobic004G047600 Sobic003G082700--Sobic004G047600 Sobic003G082700--Sobic001G484000 Sobic006G160900 Sobic006G160900 Sobic003G082700--Sobic006G160900 Sobic003G426200 Sobic003G426200 Sobic003G082700--Sobic003G426200 Sobic001G471800 Sobic001G471800 Sobic003G082700--Sobic001G471800 Sobic003G082700--Sobic001G068500 Sobic001G059500 Sobic001G059500 Sobic009G008800--Sobic001G059500 Sobic010G106700 Sobic010G106700 Sobic009G008800--Sobic010G106700 Sobic009G008800--Sobic003G352700 Sobic009G008800--Sobic001G068500 Sobic009G008800--Sobic003G082700 Sobic001G046800 Sobic001G046800 Sobic009G008800--Sobic001G046800 Sobic009G008800--Sobic003G239100 Sobic009G008800--Sobic001G144800 Sobic003G206700 Sobic003G206700 Sobic009G008800--Sobic003G206700 Sobic001G302300 Sobic001G302300 Sobic007G091900--Sobic001G302300 Sobic003G270400 Sobic003G270400 Sobic007G091900--Sobic003G270400 Sobic007G119500 Sobic007G119500 Sobic007G091900--Sobic007G119500 Sobic003G366300 Sobic003G366300 Sobic007G091900--Sobic003G366300 Sobic001G406700 Sobic001G406700 Sobic007G091900--Sobic001G406700 Sobic007G091900--Sobic004G047600 Sobic003G387500 Sobic003G387500 Sobic007G091900--Sobic003G387500 Sobic004G319600 Sobic004G319600 Sobic007G091900--Sobic004G319600 Sobic003G378800 Sobic003G378800 Sobic007G091900--Sobic003G378800
Octagon: transcription factors


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