Gene annotation
Transcriptome id Sobic.005G145100.1,Sobic.005G145100.2
Synonym PLA2-ALPHA, Sb05g021000, ATSPLA2-ALPHA
Functional annotation phospholipase A2, putative, expressed
UniProt A0A1Z5RIM4 , C5Y3X5
Pfam -
Panther DB PTHR11716 PTHR11716:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016042; lipid catabolic process GO:0005509calcium ion binding GO:0004623phospholipase A2 activity


Orthologs (automatic annotation)
TAIR AT2G06925 : Phospholipase A2 family protein
RAP-DB (Rice) LOC_Os11g34440.1 : phospholipase A2, putative, expressed
MaizeGDB (Corn) Zm00025a033539
Brachypodium KQJ88265
Barley HORVU7Hr1G105410.1 , HORVU7Hr1G105470.1
Wheat TraesCS7D02G446400 , TraesCS7A02G457900 , TraesCS7B02G358400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G028500 app1, putative, expressed -
2 Sobic.001G208600 receptor kinase like protein, putative, expressed -
3 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
4 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
5 Sobic.001G129600 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
6 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
7 Sobic.001G140800 helix-loop-helix DNA-binding protein, putative, expressed -
8 Sobic.001G388000 GTPase-activating protein, putative, expressed -
9 Sobic.001G144800 LTPL72 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
12 Sobic.010G133932 - -
13 Sobic.002G050100 LTPL100 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.003G206700 heavy metal-associated domain containing protein, expressed -
15 Sobic.002G030800 app1, putative, expressed -
16 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
17 Sobic.005G122800 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
18 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
19 Sobic.002G053900 Cupin domain containing protein, expressed -
20 Sobic.003G341500 lignin modification(PubMedID : 28529519)@laccase precursor protein, putative, expressed K05909: laccase


Gene co-expression network
sample Sobic005G145100 Sobic005G145100 Sobic002G028500 Sobic002G028500 Sobic005G145100--Sobic002G028500 Sobic001G208600 Sobic001G208600 Sobic005G145100--Sobic001G208600 Sobic003G239100 Sobic003G239100 Sobic005G145100--Sobic003G239100 Sobic004G290300 Sobic004G290300 Sobic005G145100--Sobic004G290300 Sobic001G129600 Sobic001G129600 Sobic005G145100--Sobic001G129600 Sobic004G266700 Sobic004G266700 Sobic005G145100--Sobic004G266700 Sobic001G140800 Sobic001G140800 Sobic005G145100--Sobic001G140800 Sobic001G388000 Sobic001G388000 Sobic005G145100--Sobic001G388000 Sobic001G144800 Sobic001G144800 Sobic005G145100--Sobic001G144800 Sobic002G028500--Sobic005G145100 Sobic002G028500--Sobic001G129600 Sobic002G028500--Sobic001G144800 Sobic002G028500--Sobic004G290300 Sobic002G028500--Sobic004G266700 Sobic002G028500--Sobic001G208600 Sobic002G050100 Sobic002G050100 Sobic002G028500--Sobic002G050100 Sobic002G028500--Sobic001G140800 Sobic002G028500--Sobic003G239100 Sobic001G208600--Sobic005G145100 Sobic003G099166 Sobic003G099166 Sobic001G208600--Sobic003G099166 Sobic006G075000 Sobic006G075000 Sobic001G208600--Sobic006G075000 Sobic001G208600--Sobic003G239100 Sobic009G017500 Sobic009G017500 Sobic001G208600--Sobic009G017500 Sobic002G053900 Sobic002G053900 Sobic001G208600--Sobic002G053900 Sobic001G334900 Sobic001G334900 Sobic001G208600--Sobic001G334900 Sobic002G030800 Sobic002G030800 Sobic001G208600--Sobic002G030800 Sobic003G352700 Sobic003G352700 Sobic001G208600--Sobic003G352700 Sobic003G082700 Sobic003G082700 Sobic003G239100--Sobic003G082700 Sobic009G008800 Sobic009G008800 Sobic003G239100--Sobic009G008800 Sobic003G239100--Sobic003G352700 Sobic003G239100--Sobic005G145100 Sobic003G239100--Sobic004G266700 Sobic005G127200 Sobic005G127200 Sobic003G239100--Sobic005G127200 Sobic003G239100--Sobic002G053900 Sobic003G239100--Sobic002G030800 Sobic001G484000 Sobic001G484000 Sobic003G239100--Sobic001G484000 Sobic004G290300--Sobic005G145100 Sobic004G290300--Sobic001G129600 Sobic004G290300--Sobic002G028500 Sobic004G290300--Sobic001G140800 Sobic004G290300--Sobic001G388000 Sobic004G290300--Sobic001G208600 Sobic004G290300--Sobic004G266700 Sobic001G343400 Sobic001G343400 Sobic004G290300--Sobic001G343400 Sobic005G112000 Sobic005G112000 Sobic004G290300--Sobic005G112000 Sobic001G129600--Sobic002G028500 Sobic001G129600--Sobic005G145100 Sobic001G129600--Sobic004G290300 Sobic001G129600--Sobic001G140800 Sobic001G129600--Sobic001G388000 Sobic010G133932 Sobic010G133932 Sobic001G129600--Sobic010G133932 Sobic001G129600--Sobic004G266700 Sobic005G087400 Sobic005G087400 Sobic001G129600--Sobic005G087400 Sobic001G129600--Sobic003G239100 Sobic004G266700--Sobic005G127200 Sobic003G341500 Sobic003G341500 Sobic004G266700--Sobic003G341500 Sobic004G266700--Sobic001G144800 Sobic001G068500 Sobic001G068500 Sobic004G266700--Sobic001G068500 Sobic010G093300 Sobic010G093300 Sobic004G266700--Sobic010G093300 Sobic004G266700--Sobic009G008800 Sobic003G368100 Sobic003G368100 Sobic004G266700--Sobic003G368100 Sobic004G266700--Sobic003G239100 Sobic001G059600 Sobic001G059600 Sobic004G266700--Sobic001G059600 Sobic005G110600 Sobic005G110600 Sobic001G140800--Sobic005G110600 Sobic001G140800--Sobic001G388000 Sobic001G140800--Sobic005G145100 Sobic001G140800--Sobic010G133932 Sobic001G140800--Sobic005G087400 Sobic001G140800--Sobic001G129600 Sobic005G130700 Sobic005G130700 Sobic001G140800--Sobic005G130700 Sobic001G140800--Sobic001G484000 Sobic006G062300 Sobic006G062300 Sobic001G140800--Sobic006G062300 Sobic001G388000--Sobic010G133932 Sobic001G388000--Sobic001G140800 Sobic001G388000--Sobic005G145100 Sobic001G388000--Sobic005G112000 Sobic003G366300 Sobic003G366300 Sobic001G388000--Sobic003G366300 Sobic001G388000--Sobic005G110600 Sobic001G388000--Sobic004G290300 Sobic001G388000--Sobic003G239100 Sobic001G388000--Sobic001G484000 Sobic001G144800--Sobic003G341500 Sobic001G144800--Sobic004G266700 Sobic003G206700 Sobic003G206700 Sobic001G144800--Sobic003G206700 Sobic001G059500 Sobic001G059500 Sobic001G144800--Sobic001G059500 Sobic001G144800--Sobic001G068500 Sobic001G144800--Sobic003G368100 Sobic001G144800--Sobic009G008800 Sobic001G144800--Sobic001G059600 Sobic001G144800--Sobic005G127200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.