Gene annotation
Transcriptome id Sobic.K009800.4,Sobic.K009800.3
Synonym Sb0120s002010
Functional annotation chloroplast unusual positioning protein, putative, expressed
UniProt C6JS82 , A0A120GUW2
Pfam -
Panther DB PTHR31342 PTHR31342:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G48280 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os12g01449.1 : chloroplast unusual positioning protein, putative, expressed
MaizeGDB (Corn) Zm00025a028898
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G140800 helix-loop-helix DNA-binding protein, putative, expressed -
2 Sobic.001G388000 GTPase-activating protein, putative, expressed -
3 Sobic.003G366300 protein kinase domain containing protein, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
4 Sobic.001G129600 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
5 Sobic.010G133932 - -
6 Sobic.005G145100 phospholipase A2, putative, expressed -
7 Sobic.003G320500 early nodulin 20 precursor, putative, expressed -
8 Sobic.005G110600 glycosyl hydrolase, putative, expressed K01183: chitinase
9 Sobic.008G021900 nucleoside-triphosphatase, putative, expressed K14641: apyrase
10 Sobic.006G062300 Leucine Rich Repeat family protein, expressed -
11 Sobic.003G270400 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.004G247300 cysteine-rich repeat secretory protein precursor, putative, expressed -
13 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
14 Sobic.003G151300 serine/threonine-protein kinase, putative, expressed -
15 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
16 Sobic.002G045800 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
17 Sobic.005G130700 expressed protein -
18 Sobic.009G099700 - -
19 Sobic.005G054700 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
20 Sobic.005G087400 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase


Gene co-expression network
sample SobicK009800 SobicK009800 Sobic001G140800 Sobic001G140800 SobicK009800--Sobic001G140800 Sobic001G388000 Sobic001G388000 SobicK009800--Sobic001G388000 Sobic003G366300 Sobic003G366300 SobicK009800--Sobic003G366300 Sobic001G129600 Sobic001G129600 SobicK009800--Sobic001G129600 Sobic010G133932 Sobic010G133932 SobicK009800--Sobic010G133932 Sobic005G145100 Sobic005G145100 SobicK009800--Sobic005G145100 Sobic003G320500 Sobic003G320500 SobicK009800--Sobic003G320500 Sobic005G110600 Sobic005G110600 SobicK009800--Sobic005G110600 Sobic008G021900 Sobic008G021900 SobicK009800--Sobic008G021900 Sobic001G140800--Sobic005G110600 Sobic001G140800--Sobic001G388000 Sobic001G140800--Sobic005G145100 Sobic001G140800--Sobic010G133932 Sobic005G087400 Sobic005G087400 Sobic001G140800--Sobic005G087400 Sobic001G140800--Sobic001G129600 Sobic005G130700 Sobic005G130700 Sobic001G140800--Sobic005G130700 Sobic001G484000 Sobic001G484000 Sobic001G140800--Sobic001G484000 Sobic006G062300 Sobic006G062300 Sobic001G140800--Sobic006G062300 Sobic001G388000--Sobic010G133932 Sobic001G388000--Sobic001G140800 Sobic001G388000--Sobic005G145100 Sobic005G112000 Sobic005G112000 Sobic001G388000--Sobic005G112000 Sobic001G388000--Sobic003G366300 Sobic001G388000--Sobic005G110600 Sobic004G290300 Sobic004G290300 Sobic001G388000--Sobic004G290300 Sobic003G239100 Sobic003G239100 Sobic001G388000--Sobic003G239100 Sobic001G388000--Sobic001G484000 Sobic003G270400 Sobic003G270400 Sobic003G366300--Sobic003G270400 Sobic003G366300--Sobic005G112000 Sobic003G366300--Sobic001G388000 Sobic007G091900 Sobic007G091900 Sobic003G366300--Sobic007G091900 Sobic007G119500 Sobic007G119500 Sobic003G366300--Sobic007G119500 Sobic003G366300--Sobic005G110600 Sobic003G099166 Sobic003G099166 Sobic003G366300--Sobic003G099166 Sobic004G163600 Sobic004G163600 Sobic003G366300--Sobic004G163600 Sobic003G198500 Sobic003G198500 Sobic003G366300--Sobic003G198500 Sobic002G028500 Sobic002G028500 Sobic001G129600--Sobic002G028500 Sobic001G129600--Sobic005G145100 Sobic001G129600--Sobic004G290300 Sobic001G129600--Sobic001G140800 Sobic001G129600--Sobic001G388000 Sobic001G129600--Sobic010G133932 Sobic004G266700 Sobic004G266700 Sobic001G129600--Sobic004G266700 Sobic001G129600--Sobic005G087400 Sobic001G129600--Sobic003G239100 Sobic010G133932--Sobic001G388000 Sobic010G133932--Sobic001G140800 Sobic010G133932--Sobic005G110600 Sobic010G133932--Sobic005G112000 Sobic010G133932--Sobic005G145100 Sobic010G133932--Sobic003G239100 Sobic010G133932--Sobic004G266700 Sobic010G133932--Sobic001G484000 Sobic003G082700 Sobic003G082700 Sobic010G133932--Sobic003G082700 Sobic005G145100--Sobic002G028500 Sobic001G208600 Sobic001G208600 Sobic005G145100--Sobic001G208600 Sobic005G145100--Sobic003G239100 Sobic005G145100--Sobic004G290300 Sobic005G145100--Sobic001G129600 Sobic005G145100--Sobic004G266700 Sobic005G145100--Sobic001G140800 Sobic005G145100--Sobic001G388000 Sobic001G144800 Sobic001G144800 Sobic005G145100--Sobic001G144800 Sobic010G161900 Sobic010G161900 Sobic003G320500--Sobic010G161900 Sobic003G320500--Sobic005G130700 Sobic003G320500--SobicK009800 Sobic003G320500--Sobic006G062300 Sobic001G258100 Sobic001G258100 Sobic003G320500--Sobic001G258100 Sobic007G103800 Sobic007G103800 Sobic003G320500--Sobic007G103800 Sobic001G451800 Sobic001G451800 Sobic003G320500--Sobic001G451800 Sobic010G116100 Sobic010G116100 Sobic003G320500--Sobic010G116100 Sobic003G320500--Sobic005G110600 Sobic005G110600--Sobic005G130700 Sobic005G110600--Sobic006G062300 Sobic004G297950 Sobic004G297950 Sobic005G110600--Sobic004G297950 Sobic005G110600--Sobic001G140800 Sobic003G419600 Sobic003G419600 Sobic005G110600--Sobic003G419600 Sobic005G110600--Sobic010G133932 Sobic010G007000 Sobic010G007000 Sobic005G110600--Sobic010G007000 Sobic003G269100 Sobic003G269100 Sobic005G110600--Sobic003G269100 Sobic005G110600--Sobic001G484000 Sobic001G250100 Sobic001G250100 Sobic008G021900--Sobic001G250100 Sobic003G151300 Sobic003G151300 Sobic008G021900--Sobic003G151300 Sobic001G112800 Sobic001G112800 Sobic008G021900--Sobic001G112800 Sobic008G021900--Sobic003G366300 Sobic008G157000 Sobic008G157000 Sobic008G021900--Sobic008G157000 Sobic010G014400 Sobic010G014400 Sobic008G021900--Sobic010G014400 Sobic001G365200 Sobic001G365200 Sobic008G021900--Sobic001G365200 Sobic008G021900--Sobic003G099166 Sobic010G218300 Sobic010G218300 Sobic008G021900--Sobic010G218300
Octagon: transcription factors


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