Gene annotation
Transcriptome id Sobic.001G140300.1
Synonym Sb01g012210, ATXYN1, RXF12
Functional annotation glycosyl hydrolase family 10 protein, putative, expressed
UniProt C5WPQ6
Pfam PF02018 PF00331
Panther DB PTHR31490 PTHR31490:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016798; hydrolase activity, acting on glycosyl bonds GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT1G58370 : glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
RAP-DB (Rice) LOC_Os03g47010.1 : glycosyl hydrolase family 10 protein, putative, expressed
MaizeGDB (Corn) Zm00025a023570 , Zm00025a017127
Brachypodium KQK13823
Barley HORVU4Hr1G063790.28 , HORVU5Hr1G106250.2 , HORVU5Hr1G106250.1 , HORVU4Hr1G063790.20 , HORVU4Hr1G063790.21 , HORVU4Hr1G063790.22 , HORVU4Hr1G063790.23 , HORVU4Hr1G063790.24 , HORVU4Hr1G063790.25 , HORVU4Hr1G063790.26 , HORVU4Hr1G063790.27 , HORVU4Hr1G070310.20 , HORVU4Hr1G070310.21 , HORVU4Hr1G070310.22 , HORVU5Hr1G106270.1 , HORVU3Hr1G007470.5 , HORVU3Hr1G007470.4 , HORVU3Hr1G007470.6 , HORVU3Hr1G007470.1 , HORVU3Hr1G007470.3 , HORVU3Hr1G007470.2 , HORVU4Hr1G063790.19 , HORVU4Hr1G063790.18 , HORVU4Hr1G063790.15 , HORVU4Hr1G063790.17 , HORVU4Hr1G063790.16 , HORVU4Hr1G063790.11 , HORVU4Hr1G063790.10 , HORVU4Hr1G063790.13 , HORVU5Hr1G106280.1 , HORVU4Hr1G070310.19 , HORVU4Hr1G070310.18 , HORVU4Hr1G070310.11 , HORVU4Hr1G070310.13 , HORVU4Hr1G070310.12 , HORVU4Hr1G070310.15 , HORVU4Hr1G070310.14 , HORVU5Hr1G106210.1 , HORVU4Hr1G003220.3 , HORVU4Hr1G003220.2 , HORVU4Hr1G003220.1 , HORVU4Hr1G003220.5 , HORVU4Hr1G003220.4 , HORVU5Hr1G106210.2 , HORVU4Hr1G063790.14 , HORVU4Hr1G063790.12 , HORVU4Hr1G063790.9 , HORVU4Hr1G063790.8 , HORVU4Hr1G063790.1 , HORVU4Hr1G063790.3 , HORVU4Hr1G063790.2 , HORVU4Hr1G063790.5 , HORVU4Hr1G063790.4 , HORVU4Hr1G063790.7 , HORVU4Hr1G063790.6
Wheat TraesCS4A02G071100 , TraesCS5D02G448800 , TraesCS4B02G259100 , TraesCS4A02G071100 , TraesCS5A02G441600 , TraesCS3A02G038200 , TraesCS4B02G021800 , TraesCS4D02G259500 , TraesCS5A02G441400 , TraesCS3D02G041700 , TraesCS5B02G445500 , TraesCS5B02G445700 , TraesCS3B02G045700 , TraesCS3B02G045700 , TraesCS4B02G227000 , TraesCS4D02G227700 , TraesCS4A02G292300 , TraesCS5D02G448600 , TraesCS4D02G019500 , TraesCS5A02G441700 , TraesCS4A02G045500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G343400 3-beta-hydroxy-delta5-steroid dehydrogenase (At)(PubMedID : 27208977)@sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
2 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
3 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
4 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
5 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
6 Sobic.003G371400 proton-dependent oligopeptide transport, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
7 Sobic.001G358700 heavy metal-associated domain containing protein, expressed -
8 Sobic.005G145100 phospholipase A2, putative, expressed -
9 Sobic.004G116800 harpin-induced protein 1 domain containing protein, expressed -
10 Sobic.001G388000 GTPase-activating protein, putative, expressed -
11 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
12 Sobic.002G041150 - -
13 Sobic.010G133932 - -
14 Sobic.001G208600 receptor kinase like protein, putative, expressed -
15 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
16 Sobic.001G129600 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
17 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.005G122800 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
19 Sobic.003G443200 xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
20 Sobic.006G160900 NAC domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G140300 Sobic001G140300 Sobic001G343400 Sobic001G343400 Sobic001G140300--Sobic001G343400 Sobic005G112000 Sobic005G112000 Sobic001G140300--Sobic005G112000 Sobic003G082700 Sobic003G082700 Sobic001G140300--Sobic003G082700 Sobic003G239100 Sobic003G239100 Sobic001G140300--Sobic003G239100 Sobic004G290300 Sobic004G290300 Sobic001G140300--Sobic004G290300 Sobic003G371400 Sobic003G371400 Sobic001G140300--Sobic003G371400 Sobic001G358700 Sobic001G358700 Sobic001G140300--Sobic001G358700 Sobic005G145100 Sobic005G145100 Sobic001G140300--Sobic005G145100 Sobic004G116800 Sobic004G116800 Sobic001G140300--Sobic004G116800 Sobic001G343400--Sobic003G371400 Sobic003G234101 Sobic003G234101 Sobic001G343400--Sobic003G234101 Sobic001G343400--Sobic004G290300 Sobic001G343400--Sobic001G140300 Sobic001G343400--Sobic005G112000 Sobic001G343400--Sobic005G145100 Sobic001G388000 Sobic001G388000 Sobic001G343400--Sobic001G388000 Sobic002G041150 Sobic002G041150 Sobic001G343400--Sobic002G041150 Sobic008G055800 Sobic008G055800 Sobic001G343400--Sobic008G055800 Sobic005G112000--Sobic003G371400 Sobic005G112000--Sobic003G082700 Sobic005G112000--Sobic001G388000 Sobic010G133932 Sobic010G133932 Sobic005G112000--Sobic010G133932 Sobic003G270400 Sobic003G270400 Sobic005G112000--Sobic003G270400 Sobic003G366300 Sobic003G366300 Sobic005G112000--Sobic003G366300 Sobic001G208600 Sobic001G208600 Sobic005G112000--Sobic001G208600 Sobic010G007000 Sobic010G007000 Sobic005G112000--Sobic010G007000 Sobic006G160900 Sobic006G160900 Sobic005G112000--Sobic006G160900 Sobic003G352700 Sobic003G352700 Sobic003G082700--Sobic003G352700 Sobic003G082700--Sobic003G239100 Sobic009G008800 Sobic009G008800 Sobic003G082700--Sobic009G008800 Sobic004G047600 Sobic004G047600 Sobic003G082700--Sobic004G047600 Sobic001G484000 Sobic001G484000 Sobic003G082700--Sobic001G484000 Sobic003G082700--Sobic006G160900 Sobic003G426200 Sobic003G426200 Sobic003G082700--Sobic003G426200 Sobic001G471800 Sobic001G471800 Sobic003G082700--Sobic001G471800 Sobic001G068500 Sobic001G068500 Sobic003G082700--Sobic001G068500 Sobic003G239100--Sobic003G082700 Sobic003G239100--Sobic009G008800 Sobic003G239100--Sobic003G352700 Sobic003G239100--Sobic005G145100 Sobic004G266700 Sobic004G266700 Sobic003G239100--Sobic004G266700 Sobic005G127200 Sobic005G127200 Sobic003G239100--Sobic005G127200 Sobic002G053900 Sobic002G053900 Sobic003G239100--Sobic002G053900 Sobic002G030800 Sobic002G030800 Sobic003G239100--Sobic002G030800 Sobic003G239100--Sobic001G484000 Sobic004G290300--Sobic005G145100 Sobic001G129600 Sobic001G129600 Sobic004G290300--Sobic001G129600 Sobic002G028500 Sobic002G028500 Sobic004G290300--Sobic002G028500 Sobic001G140800 Sobic001G140800 Sobic004G290300--Sobic001G140800 Sobic004G290300--Sobic001G388000 Sobic004G290300--Sobic001G208600 Sobic004G290300--Sobic004G266700 Sobic004G290300--Sobic001G343400 Sobic004G290300--Sobic005G112000 Sobic003G371400--Sobic005G112000 Sobic003G371400--Sobic001G343400 Sobic003G371400--Sobic008G055800 Sobic009G221900 Sobic009G221900 Sobic003G371400--Sobic009G221900 Sobic003G371400--Sobic003G082700 Sobic003G371400--Sobic001G208600 Sobic003G378800 Sobic003G378800 Sobic003G371400--Sobic003G378800 Sobic003G099166 Sobic003G099166 Sobic003G371400--Sobic003G099166 Sobic002G083600 Sobic002G083600 Sobic003G371400--Sobic002G083600 Sobic001G358700--Sobic003G239100 Sobic001G358700--Sobic001G208600 Sobic001G358700--Sobic002G030800 Sobic001G358700--Sobic005G145100 Sobic001G358700--Sobic002G053900 Sobic001G358700--Sobic005G127200 Sobic001G358700--Sobic004G266700 Sobic001G358700--Sobic003G082700 Sobic002G003500 Sobic002G003500 Sobic001G358700--Sobic002G003500 Sobic005G145100--Sobic002G028500 Sobic005G145100--Sobic001G208600 Sobic005G145100--Sobic003G239100 Sobic005G145100--Sobic004G290300 Sobic005G145100--Sobic001G129600 Sobic005G145100--Sobic004G266700 Sobic005G145100--Sobic001G140800 Sobic005G145100--Sobic001G388000 Sobic001G144800 Sobic001G144800 Sobic005G145100--Sobic001G144800 Sobic004G116800--Sobic001G208600 Sobic004G116800--Sobic003G371400 Sobic004G116800--Sobic005G127200 Sobic004G116800--Sobic002G030800 Sobic004G116800--Sobic003G239100 Sobic004G116800--Sobic003G352700 Sobic004G116800--Sobic004G266700 Sobic004G116800--Sobic009G221900 Sobic004G116800--Sobic005G112000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.