Gene annotation
Transcriptome id Sobic.001G358700.2,Sobic.001G358700.1
Synonym Sb01g034250
Functional annotation heavy metal-associated domain containing protein, expressed
UniProt C5WYN9 , A0A1Z5S9B7
Pfam PF00403
Panther DB PTHR22814:SF116 PTHR22814 PTHR22814 PTHR22814:SF116
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G01490 : Copper transport protein family,Heavy metal transport/detoxification superfamily protein
RAP-DB (Rice) LOC_Os03g03500.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002645
Brachypodium -
Barley HORVU3Hr1G062520.3 , HORVU3Hr1G062520.1 , HORVU3Hr1G062520.4 , HORVU3Hr1G062520.2
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
2 Sobic.001G208600 receptor kinase like protein, putative, expressed -
3 Sobic.002G030800 app1, putative, expressed -
4 Sobic.005G145100 phospholipase A2, putative, expressed -
5 Sobic.002G053900 Cupin domain containing protein, expressed -
6 Sobic.005G127200 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.004G266700 hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
9 Sobic.002G003500 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.001G068500 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
11 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.003G371400 proton-dependent oligopeptide transport, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
13 Sobic.003G443200 xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
14 Sobic.001G343400 3-beta-hydroxy-delta5-steroid dehydrogenase (At)(PubMedID : 27208977)@sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
15 Sobic.001G140300 glycosyl hydrolase family 10 protein, putative, expressed -
16 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
17 Sobic.003G099166 - -
18 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
19 Sobic.004G290300 anthranilate phosphoribosyltransferase, putative, expressed -
20 Sobic.002G028500 app1, putative, expressed -


Gene co-expression network
sample Sobic001G358700 Sobic001G358700 Sobic003G239100 Sobic003G239100 Sobic001G358700--Sobic003G239100 Sobic001G208600 Sobic001G208600 Sobic001G358700--Sobic001G208600 Sobic002G030800 Sobic002G030800 Sobic001G358700--Sobic002G030800 Sobic005G145100 Sobic005G145100 Sobic001G358700--Sobic005G145100 Sobic002G053900 Sobic002G053900 Sobic001G358700--Sobic002G053900 Sobic005G127200 Sobic005G127200 Sobic001G358700--Sobic005G127200 Sobic004G266700 Sobic004G266700 Sobic001G358700--Sobic004G266700 Sobic003G082700 Sobic003G082700 Sobic001G358700--Sobic003G082700 Sobic002G003500 Sobic002G003500 Sobic001G358700--Sobic002G003500 Sobic003G239100--Sobic003G082700 Sobic009G008800 Sobic009G008800 Sobic003G239100--Sobic009G008800 Sobic003G352700 Sobic003G352700 Sobic003G239100--Sobic003G352700 Sobic003G239100--Sobic005G145100 Sobic003G239100--Sobic004G266700 Sobic003G239100--Sobic005G127200 Sobic003G239100--Sobic002G053900 Sobic003G239100--Sobic002G030800 Sobic001G484000 Sobic001G484000 Sobic003G239100--Sobic001G484000 Sobic001G208600--Sobic005G145100 Sobic003G099166 Sobic003G099166 Sobic001G208600--Sobic003G099166 Sobic006G075000 Sobic006G075000 Sobic001G208600--Sobic006G075000 Sobic001G208600--Sobic003G239100 Sobic009G017500 Sobic009G017500 Sobic001G208600--Sobic009G017500 Sobic001G208600--Sobic002G053900 Sobic001G334900 Sobic001G334900 Sobic001G208600--Sobic001G334900 Sobic001G208600--Sobic002G030800 Sobic001G208600--Sobic003G352700 Sobic002G030800--Sobic005G127200 Sobic010G093300 Sobic010G093300 Sobic002G030800--Sobic010G093300 Sobic001G068500 Sobic001G068500 Sobic002G030800--Sobic001G068500 Sobic001G471800 Sobic001G471800 Sobic002G030800--Sobic001G471800 Sobic001G413700 Sobic001G413700 Sobic002G030800--Sobic001G413700 Sobic001G250100 Sobic001G250100 Sobic002G030800--Sobic001G250100 Sobic002G030800--Sobic003G239100 Sobic001G059600 Sobic001G059600 Sobic002G030800--Sobic001G059600 Sobic006G224500 Sobic006G224500 Sobic002G030800--Sobic006G224500 Sobic002G028500 Sobic002G028500 Sobic005G145100--Sobic002G028500 Sobic005G145100--Sobic001G208600 Sobic005G145100--Sobic003G239100 Sobic004G290300 Sobic004G290300 Sobic005G145100--Sobic004G290300 Sobic001G129600 Sobic001G129600 Sobic005G145100--Sobic001G129600 Sobic005G145100--Sobic004G266700 Sobic001G140800 Sobic001G140800 Sobic005G145100--Sobic001G140800 Sobic001G388000 Sobic001G388000 Sobic005G145100--Sobic001G388000 Sobic001G144800 Sobic001G144800 Sobic005G145100--Sobic001G144800 Sobic001G046800 Sobic001G046800 Sobic002G053900--Sobic001G046800 Sobic009G072800 Sobic009G072800 Sobic002G053900--Sobic009G072800 Sobic002G053900--Sobic009G008800 Sobic010G106700 Sobic010G106700 Sobic002G053900--Sobic010G106700 Sobic010G047600 Sobic010G047600 Sobic002G053900--Sobic010G047600 Sobic002G053900--Sobic001G484000 Sobic001G190500 Sobic001G190500 Sobic002G053900--Sobic001G190500 Sobic009G215000 Sobic009G215000 Sobic002G053900--Sobic009G215000 Sobic002G053900--Sobic003G239100 Sobic005G127200--Sobic010G093300 Sobic005G127200--Sobic004G266700 Sobic005G127200--Sobic001G068500 Sobic005G127200--Sobic002G030800 Sobic003G341500 Sobic003G341500 Sobic005G127200--Sobic003G341500 Sobic005G127200--Sobic001G059600 Sobic002G030650 Sobic002G030650 Sobic005G127200--Sobic002G030650 Sobic005G127200--Sobic001G413700 Sobic003G368100 Sobic003G368100 Sobic005G127200--Sobic003G368100 Sobic004G266700--Sobic005G127200 Sobic004G266700--Sobic003G341500 Sobic004G266700--Sobic001G144800 Sobic004G266700--Sobic001G068500 Sobic004G266700--Sobic010G093300 Sobic004G266700--Sobic009G008800 Sobic004G266700--Sobic003G368100 Sobic004G266700--Sobic003G239100 Sobic004G266700--Sobic001G059600 Sobic003G082700--Sobic003G352700 Sobic003G082700--Sobic003G239100 Sobic003G082700--Sobic009G008800 Sobic004G047600 Sobic004G047600 Sobic003G082700--Sobic004G047600 Sobic003G082700--Sobic001G484000 Sobic006G160900 Sobic006G160900 Sobic003G082700--Sobic006G160900 Sobic003G426200 Sobic003G426200 Sobic003G082700--Sobic003G426200 Sobic003G082700--Sobic001G471800 Sobic003G082700--Sobic001G068500 Sobic002G003500--Sobic001G068500 Sobic002G003500--Sobic005G127200 Sobic002G030575 Sobic002G030575 Sobic002G003500--Sobic002G030575 Sobic002G003500--Sobic004G266700 Sobic002G003500--Sobic002G030650 Sobic002G003500--Sobic002G030800 Sobic002G003500--Sobic003G341500 Sobic002G003500--Sobic003G368100 Sobic002G003500--Sobic001G144800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.