Gene annotation
Transcriptome id Sobic.009G017500.2,Sobic.009G017500.1
Synonym Sb09g001670, HEXO1, ATHEX2
Functional annotation beta-hexosaminidase precursor, putative, expressed
UniProt C5YYX0
Pfam PF14845 PF00728
Panther DB PTHR22600 PTHR22600:SF16
NCBI CDD -
KEGG Orthology K12373; hexosaminidase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT3G55260 : beta-hexosaminidase 1
RAP-DB (Rice) LOC_Os05g02510.1 : beta-hexosaminidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a040846
Brachypodium KQK07755
Barley HORVU1Hr1G008250.18 , HORVU1Hr1G008250.19 , HORVU1Hr1G008250.10 , HORVU1Hr1G008250.12 , HORVU1Hr1G008250.13 , HORVU1Hr1G008250.14 , HORVU1Hr1G008250.15 , HORVU1Hr1G008250.16 , HORVU1Hr1G008250.17 , HORVU1Hr1G008250.25 , HORVU1Hr1G008250.24 , HORVU1Hr1G008250.26 , HORVU1Hr1G008250.21 , HORVU1Hr1G008250.20 , HORVU1Hr1G008250.23 , HORVU1Hr1G008250.22 , HORVU1Hr1G008250.8 , HORVU1Hr1G008250.9 , HORVU1Hr1G008250.2 , HORVU1Hr1G008250.3 , HORVU1Hr1G008250.1 , HORVU1Hr1G008250.6 , HORVU1Hr1G008250.7 , HORVU1Hr1G008250.4 , HORVU1Hr1G008250.5
Wheat TraesCS1D02G046100 , TraesCS1B02G058700 , TraesCS1A02G045400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G017500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G208600 receptor kinase like protein, putative, expressed -
2 Sobic.001G263900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
3 Sobic.009G221900 seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.002G030800 app1, putative, expressed -
5 Sobic.008G072600 plant-specific domain TIGR01627 family protein, expressed K18801: glucuronoxylan 4-O-methyltransferase
6 Sobic.010G096100 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
7 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
8 Sobic.003G099166 - -
9 Sobic.003G238600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.002G053900 Cupin domain containing protein, expressed -
11 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
12 Sobic.005G115600 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
13 Sobic.002G347300 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
14 Sobic.006G038200 receptor protein kinase, putative, expressed -
15 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
16 Sobic.008G057100 eukaryotic aspartyl protease domain containing protein, expressed -
17 Sobic.003G206700 heavy metal-associated domain containing protein, expressed -
18 Sobic.001G250100 thaumatin, putative, expressed -
19 Sobic.009G125900 expressed protein -
20 Sobic.005G145100 phospholipase A2, putative, expressed -


Gene co-expression network
sample Sobic009G017500 Sobic009G017500 Sobic001G208600 Sobic001G208600 Sobic009G017500--Sobic001G208600 Sobic001G263900 Sobic001G263900 Sobic009G017500--Sobic001G263900 Sobic009G221900 Sobic009G221900 Sobic009G017500--Sobic009G221900 Sobic002G030800 Sobic002G030800 Sobic009G017500--Sobic002G030800 Sobic008G072600 Sobic008G072600 Sobic009G017500--Sobic008G072600 Sobic010G096100 Sobic010G096100 Sobic009G017500--Sobic010G096100 Sobic006G075000 Sobic006G075000 Sobic009G017500--Sobic006G075000 Sobic003G099166 Sobic003G099166 Sobic009G017500--Sobic003G099166 Sobic003G238600 Sobic003G238600 Sobic009G017500--Sobic003G238600 Sobic005G145100 Sobic005G145100 Sobic001G208600--Sobic005G145100 Sobic001G208600--Sobic003G099166 Sobic001G208600--Sobic006G075000 Sobic003G239100 Sobic003G239100 Sobic001G208600--Sobic003G239100 Sobic001G208600--Sobic009G017500 Sobic002G053900 Sobic002G053900 Sobic001G208600--Sobic002G053900 Sobic001G334900 Sobic001G334900 Sobic001G208600--Sobic001G334900 Sobic001G208600--Sobic002G030800 Sobic003G352700 Sobic003G352700 Sobic001G208600--Sobic003G352700 Sobic001G263900--Sobic009G221900 Sobic001G263900--Sobic003G099166 Sobic001G250100 Sobic001G250100 Sobic001G263900--Sobic001G250100 Sobic001G263900--Sobic009G017500 Sobic002G383900 Sobic002G383900 Sobic001G263900--Sobic002G383900 Sobic001G263900--Sobic002G030800 Sobic001G471800 Sobic001G471800 Sobic001G263900--Sobic001G471800 Sobic002G085800 Sobic002G085800 Sobic001G263900--Sobic002G085800 Sobic007G047300 Sobic007G047300 Sobic001G263900--Sobic007G047300 Sobic009G221900--Sobic001G263900 Sobic002G347300 Sobic002G347300 Sobic009G221900--Sobic002G347300 Sobic009G221900--Sobic009G017500 Sobic009G221900--Sobic003G099166 Sobic003G371400 Sobic003G371400 Sobic009G221900--Sobic003G371400 Sobic008G091557 Sobic008G091557 Sobic009G221900--Sobic008G091557 Sobic009G221900--Sobic001G208600 Sobic009G221900--Sobic002G030800 Sobic002G207000 Sobic002G207000 Sobic009G221900--Sobic002G207000 Sobic005G127200 Sobic005G127200 Sobic002G030800--Sobic005G127200 Sobic010G093300 Sobic010G093300 Sobic002G030800--Sobic010G093300 Sobic001G068500 Sobic001G068500 Sobic002G030800--Sobic001G068500 Sobic002G030800--Sobic001G471800 Sobic001G413700 Sobic001G413700 Sobic002G030800--Sobic001G413700 Sobic002G030800--Sobic001G250100 Sobic002G030800--Sobic003G239100 Sobic001G059600 Sobic001G059600 Sobic002G030800--Sobic001G059600 Sobic006G224500 Sobic006G224500 Sobic002G030800--Sobic006G224500 Sobic006G256200 Sobic006G256200 Sobic008G072600--Sobic006G256200 Sobic008G072600--Sobic009G017500 Sobic008G072600--Sobic008G091557 Sobic008G072600--Sobic009G221900 Sobic009G063400 Sobic009G063400 Sobic008G072600--Sobic009G063400 Sobic005G107500 Sobic005G107500 Sobic008G072600--Sobic005G107500 Sobic007G038600 Sobic007G038600 Sobic008G072600--Sobic007G038600 Sobic008G072600--Sobic001G263900 Sobic008G072600--Sobic010G096100 Sobic010G096100--Sobic006G075000 Sobic010G096100--Sobic001G208600 Sobic010G096100--Sobic009G063400 Sobic009G026101 Sobic009G026101 Sobic010G096100--Sobic009G026101 Sobic009G125900 Sobic009G125900 Sobic010G096100--Sobic009G125900 Sobic010G096100--Sobic009G017500 Sobic009G251100 Sobic009G251100 Sobic010G096100--Sobic009G251100 Sobic001G484000 Sobic001G484000 Sobic010G096100--Sobic001G484000 Sobic010G114000 Sobic010G114000 Sobic010G096100--Sobic010G114000 Sobic006G075000--Sobic010G096100 Sobic006G075000--Sobic001G208600 Sobic006G075000--Sobic001G484000 Sobic009G226900 Sobic009G226900 Sobic006G075000--Sobic009G226900 Sobic002G072200 Sobic002G072200 Sobic006G075000--Sobic002G072200 Sobic006G075000--Sobic003G099166 Sobic006G075000--Sobic003G352700 Sobic006G075000--Sobic009G026101 Sobic002G338400 Sobic002G338400 Sobic006G075000--Sobic002G338400 Sobic003G099166--Sobic001G208600 Sobic003G099166--Sobic001G484000 Sobic003G099166--Sobic001G263900 Sobic003G099166--Sobic006G075000 Sobic005G052500 Sobic005G052500 Sobic003G099166--Sobic005G052500 Sobic003G082700 Sobic003G082700 Sobic003G099166--Sobic003G082700 Sobic003G099166--Sobic003G352700 Sobic003G099166--Sobic002G347300 Sobic003G099166--Sobic009G221900 Sobic003G238600--Sobic009G017500 Sobic002G365500 Sobic002G365500 Sobic003G238600--Sobic002G365500 Sobic003G238600--Sobic001G250100 Sobic006G028400 Sobic006G028400 Sobic003G238600--Sobic006G028400 Sobic001G163800 Sobic001G163800 Sobic003G238600--Sobic001G163800 Sobic009G122300 Sobic009G122300 Sobic003G238600--Sobic009G122300 Sobic001G002800 Sobic001G002800 Sobic003G238600--Sobic001G002800 Sobic007G109600 Sobic007G109600 Sobic003G238600--Sobic007G109600 Sobic003G287200 Sobic003G287200 Sobic003G238600--Sobic003G287200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.