Gene annotation
| Transcriptome id | Sobic.001G263900.1 |
|---|---|
| Synonym | Sb01g025570 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543) dehydrogenase, putative, expressed |
| UniProt | C5WND5 |
| Pfam | PF00107 PF08240 |
| Panther DB | PTHR11695 PTHR11695:SF597 |
| NCBI CDD | - |
| KEGG Orthology | K00001; E1.1.1.1, alcohol dehydrogenase |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0008270zinc ion binding |
Orthologs (automatic annotation)
| TAIR | AT1G64710 : GroES-like zinc-binding dehydrogenase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os10g07229.1 : dehydrogenase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a003823 , Zm00025a003824 |
| Brachypodium | KQJ96074 |
| Barley | HORVU2Hr1G029960.8 , HORVU2Hr1G029960.10 , HORVU2Hr1G029960.11 , HORVU5Hr1G057090.1 , HORVU5Hr1G057090.2 , HORVU5Hr1G057090.3 , HORVU5Hr1G057090.4 , HORVU5Hr1G057090.5 , HORVU2Hr1G029960.6 , HORVU2Hr1G029960.7 , HORVU2Hr1G029960.4 , HORVU2Hr1G029960.5 , HORVU2Hr1G029960.2 , HORVU2Hr1G029960.3 , HORVU2Hr1G029960.1 , HORVU2Hr1G029960.9 |
| Wheat | TraesCS1D02G052200 , TraesCS1D02G052200 , TraesCS5B02G189200 , TraesCS2A02G163900 , TraesCS2A02G163900 , TraesCS2A02G163900 , TraesCS2B02G189800 , TraesCS2D02G170900 , TraesCS1A02G050100 , TraesCS1A02G050100 , TraesCS1B02G066400 , TraesCS2D02G170800 , TraesCS5D02G196300 , TraesCS5D02G196300 , TraesCS2B02G189700 |
| Populus | - |
JBrowse
| Sobic.001G263900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G221900 | seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 2 | Sobic.003G099166 | - | - |
| 3 | Sobic.001G250100 | thaumatin, putative, expressed | - |
| 4 | Sobic.009G017500 | beta-hexosaminidase precursor, putative, expressed | K12373: hexosaminidase |
| 5 | Sobic.002G383900 | sphingolipid C4-hydroxylase SUR2, putative, expressed | K04713: sphinganine C4-monooxygenase |
| 6 | Sobic.002G030800 | app1, putative, expressed | - |
| 7 | Sobic.001G471800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed | - |
| 8 | Sobic.002G085800 | cytokinin-N-glucosyltransferase 1, putative, expressed | - |
| 9 | Sobic.007G047300 | encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed | K05279: flavonol 3-O-methyltransferase |
| 10 | Sobic.003G426200 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 11 | Sobic.003G082700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed | - |
| 12 | Sobic.004G201100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@The B-phenyl ring of naringenin can be hydroxylated at the 3' positions to produce eriodictyol(PubMedID : 16943219)@cytochrome P450, putative, expressed | K05280: flavonoid 3'-monooxygenase |
| 13 | Sobic.001G208600 | receptor kinase like protein, putative, expressed | - |
| 14 | Sobic.002G207000 | - | - |
| 15 | Sobic.008G133000 | expressed protein | - |
| 16 | Sobic.002G347300 | copper methylamine oxidase precursor, putative, expressed | K00276: AOC3, AOC2, primary-amine oxidase |
| 17 | Sobic.009G122300 | white-brown complex homolog protein 16, putative, expressed | - |
| 18 | Sobic.001G360700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K13083: flavonoid 3',5'-hydroxylase |
| 19 | Sobic.005G219700 | Leucine Rich Repeat family protein, expressed | - |
| 20 | Sobic.001G484000 | hydrolase, alpha/beta fold family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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