Gene annotation
Transcriptome id Sobic.002G207000.1
Synonym Sb02g025150
Functional annotation -
UniProt C5XCZ2
Pfam -
Panther DB PTHR38934
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
2 Sobic.003G255600 expressed protein -
3 Sobic.001G471800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed -
4 Sobic.006G224500 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.002G082000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
6 Sobic.007G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.001G514700 "Cytochrome P450, family 78,"("PubMedID : 26759170,PubMedID : 24597475")@cytochrome P450, putative, expressed -
8 Sobic.006G108300 expressed protein -
9 Sobic.005G182800 NB-ARC domain containing protein, expressed -
10 Sobic.002G029500 cytochrome P450 84A1, putative, expressed K09755: CYP84A, ferulate-5-hydroxylase
11 Sobic.007G154100 aspartic proteinase nepenthesin precursor, putative, expressed -
12 Sobic.006G031100 CAP (Cysteine-rich secretory proteins("PubMedID : 26759170,PubMedID : 24597475")@SCP-like extracellular protein, expressed -
13 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
14 Sobic.002G029600 CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
15 Sobic.002G376100 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
16 Sobic.003G215300 pleiotropic drug resistance protein, putative, expressed -
17 Sobic.009G106500 PMR5, putative, expressed -
18 Sobic.004G339800 phosphate transporter 1, putative, expressed -
19 Sobic.007G064900 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
20 Sobic.010G152500 glycosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic002G207000 Sobic002G207000 Sobic003G079100 Sobic003G079100 Sobic002G207000--Sobic003G079100 Sobic003G255600 Sobic003G255600 Sobic002G207000--Sobic003G255600 Sobic001G471800 Sobic001G471800 Sobic002G207000--Sobic001G471800 Sobic006G224500 Sobic006G224500 Sobic002G207000--Sobic006G224500 Sobic002G082000 Sobic002G082000 Sobic002G207000--Sobic002G082000 Sobic007G015100 Sobic007G015100 Sobic002G207000--Sobic007G015100 Sobic001G514700 Sobic001G514700 Sobic002G207000--Sobic001G514700 Sobic006G108300 Sobic006G108300 Sobic002G207000--Sobic006G108300 Sobic005G182800 Sobic005G182800 Sobic002G207000--Sobic005G182800 Sobic002G029600 Sobic002G029600 Sobic003G079100--Sobic002G029600 Sobic004G014600 Sobic004G014600 Sobic003G079100--Sobic004G014600 Sobic005G065700 Sobic005G065700 Sobic003G079100--Sobic005G065700 Sobic002G029500 Sobic002G029500 Sobic003G079100--Sobic002G029500 Sobic003G079100--Sobic005G182800 Sobic010G213600 Sobic010G213600 Sobic003G079100--Sobic010G213600 Sobic005G182900 Sobic005G182900 Sobic003G079100--Sobic005G182900 Sobic010G152500 Sobic010G152500 Sobic003G079100--Sobic010G152500 Sobic005G071900 Sobic005G071900 Sobic003G079100--Sobic005G071900 Sobic009G106500 Sobic009G106500 Sobic003G255600--Sobic009G106500 Sobic001G342000 Sobic001G342000 Sobic003G255600--Sobic001G342000 Sobic001G293100 Sobic001G293100 Sobic003G255600--Sobic001G293100 Sobic003G255600--Sobic005G182900 Sobic006G097900 Sobic006G097900 Sobic003G255600--Sobic006G097900 Sobic003G255600--Sobic004G014600 Sobic006G171100 Sobic006G171100 Sobic003G255600--Sobic006G171100 Sobic003G255600--Sobic002G029500 Sobic008G033100 Sobic008G033100 Sobic003G255600--Sobic008G033100 Sobic002G146000 Sobic002G146000 Sobic001G471800--Sobic002G146000 Sobic004G047600 Sobic004G047600 Sobic001G471800--Sobic004G047600 Sobic001G471800--Sobic006G224500 Sobic004G193500 Sobic004G193500 Sobic001G471800--Sobic004G193500 Sobic003G183300 Sobic003G183300 Sobic001G471800--Sobic003G183300 Sobic001G471800--Sobic003G255600 Sobic001G360700 Sobic001G360700 Sobic001G471800--Sobic001G360700 Sobic006G031100 Sobic006G031100 Sobic001G471800--Sobic006G031100 Sobic010G093300 Sobic010G093300 Sobic001G471800--Sobic010G093300 Sobic006G224500--Sobic010G152500 Sobic002G391900 Sobic002G391900 Sobic006G224500--Sobic002G391900 Sobic004G009200 Sobic004G009200 Sobic006G224500--Sobic004G009200 Sobic003G382200 Sobic003G382200 Sobic006G224500--Sobic003G382200 Sobic005G216600 Sobic005G216600 Sobic006G224500--Sobic005G216600 Sobic006G224500--Sobic006G031100 Sobic006G224500--Sobic006G097900 Sobic006G085700 Sobic006G085700 Sobic006G224500--Sobic006G085700 Sobic006G224500--Sobic002G146000 Sobic002G082000--Sobic002G029500 Sobic002G391300 Sobic002G391300 Sobic002G082000--Sobic002G391300 Sobic002G111900 Sobic002G111900 Sobic002G082000--Sobic002G111900 Sobic005G134200 Sobic005G134200 Sobic002G082000--Sobic005G134200 Sobic006G047200 Sobic006G047200 Sobic002G082000--Sobic006G047200 Sobic006G059800 Sobic006G059800 Sobic002G082000--Sobic006G059800 Sobic002G289500 Sobic002G289500 Sobic002G082000--Sobic002G289500 Sobic002G082000--Sobic006G171100 Sobic005G035900 Sobic005G035900 Sobic002G082000--Sobic005G035900 Sobic007G015100--Sobic002G029500 Sobic007G015100--Sobic010G152500 Sobic003G083800 Sobic003G083800 Sobic007G015100--Sobic003G083800 Sobic005G106300 Sobic005G106300 Sobic007G015100--Sobic005G106300 Sobic007G015100--Sobic004G009200 Sobic007G015100--Sobic002G082000 Sobic007G015100--Sobic005G182900 Sobic007G015100--Sobic003G079100 Sobic007G015100--Sobic001G293100 Sobic003G215300 Sobic003G215300 Sobic001G514700--Sobic003G215300 Sobic010G096700 Sobic010G096700 Sobic001G514700--Sobic010G096700 Sobic001G506600 Sobic001G506600 Sobic001G514700--Sobic001G506600 Sobic001G263300 Sobic001G263300 Sobic001G514700--Sobic001G263300 Sobic001G514700--Sobic006G031100 Sobic001G503000 Sobic001G503000 Sobic001G514700--Sobic001G503000 Sobic005G175900 Sobic005G175900 Sobic001G514700--Sobic005G175900 Sobic010G070400 Sobic010G070400 Sobic001G514700--Sobic010G070400 Sobic001G514700--Sobic002G029600 Sobic004G312500 Sobic004G312500 Sobic006G108300--Sobic004G312500 Sobic006G108300--Sobic005G071900 Sobic007G154100 Sobic007G154100 Sobic006G108300--Sobic007G154100 Sobic002G411000 Sobic002G411000 Sobic006G108300--Sobic002G411000 Sobic006G009700 Sobic006G009700 Sobic006G108300--Sobic006G009700 Sobic006G108300--Sobic003G079100 Sobic006G209000 Sobic006G209000 Sobic006G108300--Sobic006G209000 Sobic006G108300--Sobic002G029600 Sobic002G019100 Sobic002G019100 Sobic006G108300--Sobic002G019100 Sobic005G182800--Sobic005G182900 Sobic005G182800--Sobic004G014600 Sobic005G182800--Sobic003G079100 Sobic008G138900 Sobic008G138900 Sobic005G182800--Sobic008G138900 Sobic005G182800--Sobic006G031100 Sobic002G019000 Sobic002G019000 Sobic005G182800--Sobic002G019000 Sobic005G182800--Sobic005G216600 Sobic005G182800--Sobic004G009200 Sobic005G182800--Sobic005G065700
Octagon: transcription factors


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