Gene annotation
Transcriptome id Sobic.003G099166.1
Synonym -
Functional annotation -
UniProt A0A1W0VWH5
Pfam PF00582
Panther DB PTHR31964 PTHR31964:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress


Orthologs (automatic annotation)
TAIR AT1G48960 : Adenine nucleotide alpha hydrolases-like superfamily protein
RAP-DB (Rice) LOC_Os01g65440.1 : universal stress protein domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a023754
Brachypodium KQK02357
Barley HORVU3Hr1G000870.1 , HORVU3Hr1G000870.3 , HORVU3Hr1G000870.4 , HORVU3Hr1G000870.5 , HORVU3Hr1G000870.6
Wheat TraesCS3D02G004400 , TraesCS3B02G010600 , TraesCS3B02G007900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G208600 receptor kinase like protein, putative, expressed -
2 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
3 Sobic.001G263900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
4 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
5 Sobic.005G052500 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
6 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
7 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
8 Sobic.002G347300 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
9 Sobic.009G221900 seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.008G055800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.009G008800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase
12 Sobic.003G239100 lipase class 3 family protein, putative, expressed -
13 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
14 Sobic.002G053900 Cupin domain containing protein, expressed -
15 Sobic.002G094600 "CESA6-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@"cellulose synthase A2, incorporate UDP-sugars into cellulose"(PubMedID : 28944535)@CESA6 - cellulose synthase, expressed K10999: cellulose synthase A
16 Sobic.001G250100 thaumatin, putative, expressed -
17 Sobic.003G371400 proton-dependent oligopeptide transport, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
18 Sobic.001G471800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed -
19 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
20 Sobic.006G160900 NAC domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G099166 Sobic003G099166 Sobic001G208600 Sobic001G208600 Sobic003G099166--Sobic001G208600 Sobic001G484000 Sobic001G484000 Sobic003G099166--Sobic001G484000 Sobic001G263900 Sobic001G263900 Sobic003G099166--Sobic001G263900 Sobic006G075000 Sobic006G075000 Sobic003G099166--Sobic006G075000 Sobic005G052500 Sobic005G052500 Sobic003G099166--Sobic005G052500 Sobic003G082700 Sobic003G082700 Sobic003G099166--Sobic003G082700 Sobic003G352700 Sobic003G352700 Sobic003G099166--Sobic003G352700 Sobic002G347300 Sobic002G347300 Sobic003G099166--Sobic002G347300 Sobic009G221900 Sobic009G221900 Sobic003G099166--Sobic009G221900 Sobic005G145100 Sobic005G145100 Sobic001G208600--Sobic005G145100 Sobic001G208600--Sobic003G099166 Sobic001G208600--Sobic006G075000 Sobic003G239100 Sobic003G239100 Sobic001G208600--Sobic003G239100 Sobic009G017500 Sobic009G017500 Sobic001G208600--Sobic009G017500 Sobic002G053900 Sobic002G053900 Sobic001G208600--Sobic002G053900 Sobic001G334900 Sobic001G334900 Sobic001G208600--Sobic001G334900 Sobic002G030800 Sobic002G030800 Sobic001G208600--Sobic002G030800 Sobic001G208600--Sobic003G352700 Sobic001G484000--Sobic005G052500 Sobic001G046800 Sobic001G046800 Sobic001G484000--Sobic001G046800 Sobic001G484000--Sobic003G352700 Sobic001G484000--Sobic002G053900 Sobic003G269100 Sobic003G269100 Sobic001G484000--Sobic003G269100 Sobic001G484000--Sobic003G082700 Sobic002G094600 Sobic002G094600 Sobic001G484000--Sobic002G094600 Sobic009G008800 Sobic009G008800 Sobic001G484000--Sobic009G008800 Sobic001G484000--Sobic003G239100 Sobic001G263900--Sobic009G221900 Sobic001G263900--Sobic003G099166 Sobic001G250100 Sobic001G250100 Sobic001G263900--Sobic001G250100 Sobic001G263900--Sobic009G017500 Sobic002G383900 Sobic002G383900 Sobic001G263900--Sobic002G383900 Sobic001G263900--Sobic002G030800 Sobic001G471800 Sobic001G471800 Sobic001G263900--Sobic001G471800 Sobic002G085800 Sobic002G085800 Sobic001G263900--Sobic002G085800 Sobic007G047300 Sobic007G047300 Sobic001G263900--Sobic007G047300 Sobic010G096100 Sobic010G096100 Sobic006G075000--Sobic010G096100 Sobic006G075000--Sobic001G208600 Sobic006G075000--Sobic001G484000 Sobic009G226900 Sobic009G226900 Sobic006G075000--Sobic009G226900 Sobic002G072200 Sobic002G072200 Sobic006G075000--Sobic002G072200 Sobic006G075000--Sobic003G099166 Sobic006G075000--Sobic003G352700 Sobic009G026101 Sobic009G026101 Sobic006G075000--Sobic009G026101 Sobic002G338400 Sobic002G338400 Sobic006G075000--Sobic002G338400 Sobic005G052500--Sobic001G484000 Sobic005G052500--Sobic001G046800 Sobic005G052500--Sobic003G269100 Sobic010G106700 Sobic010G106700 Sobic005G052500--Sobic010G106700 Sobic010G047600 Sobic010G047600 Sobic005G052500--Sobic010G047600 Sobic005G052500--Sobic003G352700 Sobic004G297950 Sobic004G297950 Sobic005G052500--Sobic004G297950 Sobic005G052500--Sobic002G053900 Sobic003G321400 Sobic003G321400 Sobic005G052500--Sobic003G321400 Sobic003G082700--Sobic003G352700 Sobic003G082700--Sobic003G239100 Sobic003G082700--Sobic009G008800 Sobic004G047600 Sobic004G047600 Sobic003G082700--Sobic004G047600 Sobic003G082700--Sobic001G484000 Sobic006G160900 Sobic006G160900 Sobic003G082700--Sobic006G160900 Sobic003G426200 Sobic003G426200 Sobic003G082700--Sobic003G426200 Sobic003G082700--Sobic001G471800 Sobic001G068500 Sobic001G068500 Sobic003G082700--Sobic001G068500 Sobic003G352700--Sobic003G082700 Sobic003G352700--Sobic004G047600 Sobic003G352700--Sobic009G008800 Sobic003G352700--Sobic003G239100 Sobic003G352700--Sobic001G068500 Sobic003G352700--Sobic001G484000 Sobic001G059500 Sobic001G059500 Sobic003G352700--Sobic001G059500 Sobic005G127200 Sobic005G127200 Sobic003G352700--Sobic005G127200 Sobic003G352700--Sobic007G047300 Sobic001G012400 Sobic001G012400 Sobic002G347300--Sobic001G012400 Sobic001G012600 Sobic001G012600 Sobic002G347300--Sobic001G012600 Sobic009G232200 Sobic009G232200 Sobic002G347300--Sobic009G232200 Sobic002G347300--Sobic001G334900 Sobic002G347300--Sobic001G208600 Sobic002G347300--Sobic009G221900 Sobic002G347300--Sobic003G099166 Sobic002G347300--Sobic002G053900 Sobic002G347300--Sobic002G338400 Sobic009G221900--Sobic001G263900 Sobic009G221900--Sobic002G347300 Sobic009G221900--Sobic009G017500 Sobic009G221900--Sobic003G099166 Sobic003G371400 Sobic003G371400 Sobic009G221900--Sobic003G371400 Sobic008G091557 Sobic008G091557 Sobic009G221900--Sobic008G091557 Sobic009G221900--Sobic001G208600 Sobic009G221900--Sobic002G030800 Sobic002G207000 Sobic002G207000 Sobic009G221900--Sobic002G207000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.