Gene annotation
| Transcriptome id | Sobic.003G371400.1 |
|---|---|
| Synonym | Sb03g041220 |
| Functional annotation | proton-dependent oligopeptide transport, putative, expressed |
| UniProt | A0A1B6Q780 |
| Pfam | PF00854 |
| Panther DB | PTHR11654:SF164 PTHR11654 |
| NCBI CDD | KOG1237; H+/oligopeptide symporter |
| KEGG Orthology | K14638; SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| Gene Ontology | GO:0005215; transporter activity GO:0006810transport GO:0016020membrane |
Orthologs (automatic annotation)
| TAIR | AT1G22540 : Major facilitator superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g65190.1 : POT domain containing peptide transporter, putative, expressed |
| MaizeGDB (Corn) | Zm00025a026638 , Zm00025a026637 , Zm00025a026647 |
| Brachypodium | KQK10760 , KQK10818 , PNT73275 , PNT73274 |
| Barley | HORVU3Hr1G082490.1 , HORVU3Hr1G082490.2 , HORVU3Hr1G082490.3 , HORVU3Hr1G082490.4 , HORVU3Hr1G082490.5 , HORVU3Hr1G082490.7 , HORVU3Hr1G082490.9 , HORVU3Hr1G082440.3 , HORVU3Hr1G082440.2 , HORVU3Hr1G082440.1 , HORVU3Hr1G082440.6 , HORVU3Hr1G082440.5 , HORVU3Hr1G082440.4 , HORVU3Hr1G082490.12 , HORVU3Hr1G082490.13 , HORVU3Hr1G082490.10 , HORVU3Hr1G082490.11 , HORVU3Hr1G082490.16 , HORVU3Hr1G082490.14 , HORVU3Hr1G082490.15 |
| Wheat | TraesCS3D02G375600 , TraesCS3A02G382300 , TraesCS3B02G415000 , TraesCS3A02G382600 , TraesCS3B02G415100 , TraesCS3D02G375500 , TraesCS3B02G415200 , TraesCS3D02G375700 , TraesCS3B02G415300 , TraesCS3A02G382400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G112000 | P21-Rho-binding domain containing protein, putative, expressed | - |
| 2 | Sobic.001G343400 | 3-beta-hydroxy-delta5-steroid dehydrogenase (At)(PubMedID : 27208977)@sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 3 | Sobic.008G055800 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 4 | Sobic.009G221900 | seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 5 | Sobic.003G082700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed | - |
| 6 | Sobic.001G208600 | receptor kinase like protein, putative, expressed | - |
| 7 | Sobic.003G378800 | amino acid transporter, putative, expressed | - |
| 8 | Sobic.003G099166 | - | - |
| 9 | Sobic.002G083600 | AP2 domain containing protein, expressed | K09284: AP2-like factor, euAP2 lineage |
| 10 | Sobic.001G263900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@dehydrogenase, putative, expressed | K00001: E1.1.1.1, alcohol dehydrogenase |
| 11 | Sobic.003G352700 | similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed | K05909: laccase |
| 12 | Sobic.003G239100 | lipase class 3 family protein, putative, expressed | - |
| 13 | Sobic.004G116800 | harpin-induced protein 1 domain containing protein, expressed | - |
| 14 | Sobic.001G388000 | GTPase-activating protein, putative, expressed | - |
| 15 | Sobic.005G145100 | phospholipase A2, putative, expressed | - |
| 16 | Sobic.007G119500 | expressed protein | - |
| 17 | Sobic.005G093500 | expressed protein | - |
| 18 | Sobic.003G023600 | peptide-N4-asparagine amidase A, putative, expressed | - |
| 19 | Sobic.002G207000 | - | - |
| 20 | Sobic.010G133932 | - | - |
Gene co-expression network
Octagon: transcription factors
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