Gene annotation
Transcriptome id Sobic.007G119500.2
Synonym Sb07g019490
Functional annotation expressed protein
UniProt A0A1Z5RAB8
Pfam PF05664
Panther DB PTHR31280 PTHR31280:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25800 : Protein of unknown function (DUF810)
RAP-DB (Rice) LOC_Os09g17760.1 : expressed protein
MaizeGDB (Corn) Zm00025a006026
Brachypodium PNT68015 , PNT68014 , KQJ98065 , KQJ98066 , KQJ98064 , KQJ98067
Barley HORVU4Hr1G057790.6 , HORVU4Hr1G057790.7 , HORVU4Hr1G057790.4 , HORVU4Hr1G057790.2 , HORVU4Hr1G057790.3 , HORVU4Hr1G057790.1 , HORVU4Hr1G057790.8 , HORVU4Hr1G057790.9 , HORVU4Hr1G057790.11 , HORVU4Hr1G057790.12 , HORVU4Hr1G057790.13
Wheat TraesCS4D02G200800 , TraesCS4B02G199800 , TraesCS4A02G104100 , TraesCS4A02G104100
Populus -


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cDNA sequences
Sobic.007G119500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G170500 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
2 Sobic.003G270400 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.004G047600 plant-specific domain TIGR01627 family protein, expressed -
4 Sobic.001G072600 expressed protein -
5 Sobic.002G167600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
6 Sobic.003G378800 amino acid transporter, putative, expressed -
7 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
8 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
9 Sobic.001G406700 expressed protein -
10 Sobic.008G014700 domain of unknown function, DUF250 domain containing protein, expressed -
11 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
12 Sobic.003G255600 expressed protein -
13 Sobic.001G402400 expressed protein -
14 Sobic.006G180300 ethylene-responsive protein related, putative, expressed -
15 Sobic.009G006300 auxin-induced protein 5NG4, putative, expressed -
16 Sobic.002G376100 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
17 Sobic.009G095800 DUF623 domain containing protein, expressed -
18 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
19 Sobic.002G218900 plant viral response family protein, putative, expressed -
20 Sobic.007G091900 ATP binding protein, putative, expressed -


Gene co-expression network
sample Sobic007G119500 Sobic007G119500 Sobic009G170500 Sobic009G170500 Sobic007G119500--Sobic009G170500 Sobic003G270400 Sobic003G270400 Sobic007G119500--Sobic003G270400 Sobic004G047600 Sobic004G047600 Sobic007G119500--Sobic004G047600 Sobic001G072600 Sobic001G072600 Sobic007G119500--Sobic001G072600 Sobic002G167600 Sobic002G167600 Sobic007G119500--Sobic002G167600 Sobic003G378800 Sobic003G378800 Sobic007G119500--Sobic003G378800 Sobic001G360700 Sobic001G360700 Sobic007G119500--Sobic001G360700 Sobic006G144600 Sobic006G144600 Sobic007G119500--Sobic006G144600 Sobic001G406700 Sobic001G406700 Sobic007G119500--Sobic001G406700 Sobic009G170500--Sobic001G406700 Sobic009G170500--Sobic002G167600 Sobic009G170500--Sobic007G119500 Sobic009G170500--Sobic006G144600 Sobic003G387500 Sobic003G387500 Sobic009G170500--Sobic003G387500 Sobic006G180300 Sobic006G180300 Sobic009G170500--Sobic006G180300 Sobic009G170500--Sobic004G047600 Sobic008G014700 Sobic008G014700 Sobic009G170500--Sobic008G014700 Sobic010G232500 Sobic010G232500 Sobic009G170500--Sobic010G232500 Sobic001G402400 Sobic001G402400 Sobic003G270400--Sobic001G402400 Sobic003G270400--Sobic007G119500 Sobic003G366300 Sobic003G366300 Sobic003G270400--Sobic003G366300 Sobic007G091900 Sobic007G091900 Sobic003G270400--Sobic007G091900 Sobic005G112000 Sobic005G112000 Sobic003G270400--Sobic005G112000 Sobic003G270400--Sobic001G406700 Sobic003G270400--Sobic004G047600 Sobic003G270400--Sobic008G014700 Sobic003G270400--Sobic003G378800 Sobic004G047600--Sobic001G360700 Sobic003G352700 Sobic003G352700 Sobic004G047600--Sobic003G352700 Sobic007G047300 Sobic007G047300 Sobic004G047600--Sobic007G047300 Sobic001G471800 Sobic001G471800 Sobic004G047600--Sobic001G471800 Sobic002G146000 Sobic002G146000 Sobic004G047600--Sobic002G146000 Sobic004G047600--Sobic002G167600 Sobic002G254900 Sobic002G254900 Sobic004G047600--Sobic002G254900 Sobic002G203900 Sobic002G203900 Sobic004G047600--Sobic002G203900 Sobic009G162300 Sobic009G162300 Sobic004G047600--Sobic009G162300 Sobic001G072600--Sobic002G167600 Sobic002G218900 Sobic002G218900 Sobic001G072600--Sobic002G218900 Sobic001G072600--Sobic007G119500 Sobic001G072600--Sobic001G360700 Sobic001G072600--Sobic004G047600 Sobic001G072600--Sobic006G144600 Sobic009G246700 Sobic009G246700 Sobic001G072600--Sobic009G246700 Sobic001G072600--Sobic007G047300 Sobic001G072600--Sobic009G170500 Sobic002G167600--Sobic001G360700 Sobic002G167600--Sobic006G144600 Sobic002G167600--Sobic004G047600 Sobic002G167600--Sobic001G406700 Sobic002G167600--Sobic002G203900 Sobic002G167600--Sobic009G170500 Sobic002G167600--Sobic002G254900 Sobic002G167600--Sobic001G072600 Sobic010G180100 Sobic010G180100 Sobic002G167600--Sobic010G180100 Sobic003G378800--Sobic007G119500 Sobic008G055800 Sobic008G055800 Sobic003G378800--Sobic008G055800 Sobic003G371400 Sobic003G371400 Sobic003G378800--Sobic003G371400 Sobic003G378800--Sobic003G270400 Sobic003G378800--Sobic007G091900 Sobic003G378800--Sobic004G047600 Sobic003G378800--Sobic001G072600 Sobic003G378800--Sobic007G047300 Sobic009G221900 Sobic009G221900 Sobic003G378800--Sobic009G221900 Sobic001G360700--Sobic004G047600 Sobic001G360700--Sobic007G047300 Sobic001G360700--Sobic002G167600 Sobic001G360700--Sobic002G203900 Sobic001G360700--Sobic001G471800 Sobic001G360700--Sobic002G254900 Sobic001G360700--Sobic002G146000 Sobic004G193500 Sobic004G193500 Sobic001G360700--Sobic004G193500 Sobic001G360700--Sobic001G072600 Sobic006G144600--Sobic001G406700 Sobic006G144600--Sobic010G232500 Sobic006G144600--Sobic003G387500 Sobic006G144600--Sobic002G167600 Sobic006G144600--Sobic009G170500 Sobic001G399200 Sobic001G399200 Sobic006G144600--Sobic001G399200 Sobic005G229100 Sobic005G229100 Sobic006G144600--Sobic005G229100 Sobic006G144600--Sobic007G119500 Sobic007G223600 Sobic007G223600 Sobic006G144600--Sobic007G223600 Sobic001G406700--Sobic003G387500 Sobic001G406700--Sobic006G144600 Sobic001G406700--Sobic001G399200 Sobic001G406700--Sobic009G170500 Sobic001G406700--Sobic010G232500 Sobic001G406700--Sobic002G167600 Sobic001G406700--Sobic005G229100 Sobic001G406700--Sobic007G119500 Sobic001G406700--Sobic009G246700
Octagon: transcription factors


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