Gene annotation
Transcriptome id Sobic.001G402400.2,Sobic.001G402400.1
Synonym WAVE4, DIS3, ITB1, SCAR2, Sb01g038070, ATSCAR2
Functional annotation expressed protein
UniProt C5WNF3 , A0A1Z5SA23
Pfam -
Panther DB PTHR12902 PTHR12902:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005856; cytoskeleton


Orthologs (automatic annotation)
TAIR AT2G38440 : SCAR homolog 2
RAP-DB (Rice) LOC_Os03g18710.1 : expressed protein
MaizeGDB (Corn) Zm00025a052622 , Zm00025a002049
Brachypodium KQK22075 , KQK22076 , PNT77562 , PNT77561 , PNT77560
Barley HORVU4Hr1G055030.5 , HORVU4Hr1G055030.4 , HORVU4Hr1G055030.7 , HORVU4Hr1G055030.6 , HORVU4Hr1G055030.1 , HORVU4Hr1G055030.3 , HORVU4Hr1G055030.2 , HORVU4Hr1G055030.9 , HORVU4Hr1G055030.8 , HORVU4Hr1G055030.20 , HORVU4Hr1G055030.21 , HORVU4Hr1G055030.22 , HORVU4Hr1G055030.23 , HORVU4Hr1G055030.24 , HORVU4Hr1G055030.11 , HORVU4Hr1G055030.10 , HORVU4Hr1G055030.13 , HORVU4Hr1G055030.12 , HORVU4Hr1G055030.15 , HORVU4Hr1G055030.14 , HORVU4Hr1G055030.17 , HORVU4Hr1G055030.16 , HORVU4Hr1G055030.19 , HORVU4Hr1G055030.18
Wheat TraesCS4D02G190300 , TraesCS4B02G189000 , TraesCS4A02G115200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G270400 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.003G052100 receptor-like protein kinase 2 precursor, putative, expressed -
3 Sobic.002G275500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.003G296500 leucine rich repeat family protein, putative, expressed -
5 Sobic.010G220300 glucan endo-1,3-beta-glucosidase 12 precursor, putative, expressed -
6 Sobic.008G014700 domain of unknown function, DUF250 domain containing protein, expressed -
7 Sobic.005G057000 Leucine Rich Repeat family protein, expressed -
8 Sobic.002G376100 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
9 Sobic.006G009500 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS4-01 - C2H2 zinc finger protein, expressed -
10 Sobic.007G119500 expressed protein -
11 Sobic.009G079900 endoglucanase precursor, putative, expressed -
12 Sobic.004G271500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
13 Sobic.001G144200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
14 Sobic.001G272600 powdery mildew resistance protein PM3b, putative, expressed -
15 Sobic.009G170500 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
16 Sobic.003G255600 expressed protein -
17 Sobic.005G231300 thaumatin, putative, expressed -
18 Sobic.003G083600 DNA binding protein, putative, expressed -
19 Sobic.010G007000 Leucine Rich Repeat family protein, expressed -
20 Sobic.007G172500 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic001G402400 Sobic001G402400 Sobic003G270400 Sobic003G270400 Sobic001G402400--Sobic003G270400 Sobic003G052100 Sobic003G052100 Sobic001G402400--Sobic003G052100 Sobic002G275500 Sobic002G275500 Sobic001G402400--Sobic002G275500 Sobic003G296500 Sobic003G296500 Sobic001G402400--Sobic003G296500 Sobic010G220300 Sobic010G220300 Sobic001G402400--Sobic010G220300 Sobic008G014700 Sobic008G014700 Sobic001G402400--Sobic008G014700 Sobic005G057000 Sobic005G057000 Sobic001G402400--Sobic005G057000 Sobic002G376100 Sobic002G376100 Sobic001G402400--Sobic002G376100 Sobic006G009500 Sobic006G009500 Sobic001G402400--Sobic006G009500 Sobic003G270400--Sobic001G402400 Sobic007G119500 Sobic007G119500 Sobic003G270400--Sobic007G119500 Sobic003G366300 Sobic003G366300 Sobic003G270400--Sobic003G366300 Sobic007G091900 Sobic007G091900 Sobic003G270400--Sobic007G091900 Sobic005G112000 Sobic005G112000 Sobic003G270400--Sobic005G112000 Sobic001G406700 Sobic001G406700 Sobic003G270400--Sobic001G406700 Sobic004G047600 Sobic004G047600 Sobic003G270400--Sobic004G047600 Sobic003G270400--Sobic008G014700 Sobic003G378800 Sobic003G378800 Sobic003G270400--Sobic003G378800 Sobic003G052100--Sobic001G402400 Sobic007G041600 Sobic007G041600 Sobic003G052100--Sobic007G041600 Sobic003G052100--Sobic002G275500 Sobic003G052100--Sobic010G220300 Sobic003G052100--Sobic006G009500 Sobic009G079900 Sobic009G079900 Sobic003G052100--Sobic009G079900 Sobic003G052100--Sobic003G296500 Sobic005G231300 Sobic005G231300 Sobic003G052100--Sobic005G231300 Sobic004G271500 Sobic004G271500 Sobic003G052100--Sobic004G271500 Sobic002G275500--Sobic001G402400 Sobic002G275500--Sobic003G052100 Sobic009G206500 Sobic009G206500 Sobic002G275500--Sobic009G206500 Sobic001G144200 Sobic001G144200 Sobic002G275500--Sobic001G144200 Sobic002G275500--Sobic003G296500 Sobic002G275500--Sobic004G271500 Sobic002G275500--Sobic003G270400 Sobic010G042600 Sobic010G042600 Sobic002G275500--Sobic010G042600 Sobic002G275500--Sobic007G119500 Sobic003G296500--Sobic001G402400 Sobic007G208100 Sobic007G208100 Sobic003G296500--Sobic007G208100 Sobic010G104400 Sobic010G104400 Sobic003G296500--Sobic010G104400 Sobic003G296500--Sobic005G231300 Sobic003G296500--Sobic003G052100 Sobic001G301900 Sobic001G301900 Sobic003G296500--Sobic001G301900 Sobic003G296500--Sobic010G220300 Sobic001G029800 Sobic001G029800 Sobic003G296500--Sobic001G029800 Sobic003G296500--Sobic004G271500 Sobic010G220300--Sobic007G041600 Sobic007G020700 Sobic007G020700 Sobic010G220300--Sobic007G020700 Sobic010G220300--Sobic006G009500 Sobic004G312500 Sobic004G312500 Sobic010G220300--Sobic004G312500 Sobic010G220300--Sobic009G079900 Sobic010G220300--Sobic001G402400 Sobic005G219700 Sobic005G219700 Sobic010G220300--Sobic005G219700 Sobic005G071900 Sobic005G071900 Sobic010G220300--Sobic005G071900 Sobic008G133000 Sobic008G133000 Sobic010G220300--Sobic008G133000 Sobic010G242800 Sobic010G242800 Sobic008G014700--Sobic010G242800 Sobic002G029500 Sobic002G029500 Sobic008G014700--Sobic002G029500 Sobic005G110511 Sobic005G110511 Sobic008G014700--Sobic005G110511 Sobic007G064900 Sobic007G064900 Sobic008G014700--Sobic007G064900 Sobic001G293100 Sobic001G293100 Sobic008G014700--Sobic001G293100 Sobic005G182900 Sobic005G182900 Sobic008G014700--Sobic005G182900 Sobic005G097900 Sobic005G097900 Sobic008G014700--Sobic005G097900 Sobic008G033100 Sobic008G033100 Sobic008G014700--Sobic008G033100 Sobic007G015000 Sobic007G015000 Sobic008G014700--Sobic007G015000 Sobic005G057000--Sobic001G402400 Sobic002G034301 Sobic002G034301 Sobic005G057000--Sobic002G034301 Sobic002G283500 Sobic002G283500 Sobic005G057000--Sobic002G283500 Sobic008G170400 Sobic008G170400 Sobic005G057000--Sobic008G170400 Sobic005G057000--Sobic009G079900 Sobic005G057000--Sobic003G296500 Sobic005G057000--Sobic005G231300 Sobic007G111700 Sobic007G111700 Sobic005G057000--Sobic007G111700 Sobic005G057000--Sobic003G270400 Sobic007G154100 Sobic007G154100 Sobic002G376100--Sobic007G154100 Sobic004G009200 Sobic004G009200 Sobic002G376100--Sobic004G009200 Sobic002G391900 Sobic002G391900 Sobic002G376100--Sobic002G391900 Sobic010G152500 Sobic010G152500 Sobic002G376100--Sobic010G152500 Sobic003G382200 Sobic003G382200 Sobic002G376100--Sobic003G382200 Sobic005G066300 Sobic005G066300 Sobic002G376100--Sobic005G066300 Sobic009G106100 Sobic009G106100 Sobic002G376100--Sobic009G106100 Sobic002G376100--Sobic005G071900 Sobic006G108300 Sobic006G108300 Sobic002G376100--Sobic006G108300 Sobic006G009500--Sobic010G220300 Sobic006G009500--Sobic003G052100 Sobic006G009500--Sobic001G402400 Sobic006G009500--Sobic006G108300 Sobic006G009500--Sobic004G312500 Sobic006G009500--Sobic007G041600 Sobic005G107500 Sobic005G107500 Sobic006G009500--Sobic005G107500 Sobic006G009500--Sobic007G020700 Sobic002G411000 Sobic002G411000 Sobic006G009500--Sobic002G411000
Octagon: transcription factors


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