Gene annotation
Transcriptome id Sobic.006G009500.1
Synonym Sb06g000970
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
ZOS4-01 - C2H2 zinc finger protein, expressed
UniProt C5YBQ3
Pfam -
Panther DB PTHR31681 PTHR31681:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G75710 : C2H2-like zinc finger protein
RAP-DB (Rice) LOC_Os04g02510.1 : ZOS4-01 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a012216 , Zm00025a003304 , Zm00025a012876 , Zm00025a055441 , Zm00025a051993
Brachypodium KQJ81628
Barley HORVU0Hr1G009370.1 , HORVU1Hr1G053950.1
Wheat TraesCS2A02G569700 , TraesCS2D02G004200 , TraesCS2B02G627700 , TraesCS2A02G004600 , TraesCSU02G012300
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G220300 glucan endo-1,3-beta-glucosidase 12 precursor, putative, expressed -
2 Sobic.003G052100 receptor-like protein kinase 2 precursor, putative, expressed -
3 Sobic.001G402400 expressed protein -
4 Sobic.006G108300 expressed protein -
5 Sobic.004G312500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@nitrate reductase, putative, expressed K10534: nitrate reductase (NAD(P)H)
6 Sobic.007G041600 - -
7 Sobic.005G107500 peptide transporter PTR2, putative, expressed -
8 Sobic.007G020700 ACT domain containing protein, expressed -
9 Sobic.002G411000 AP2 domain containing protein, expressed -
10 Sobic.002G376100 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
11 Sobic.009G079900 endoglucanase precursor, putative, expressed -
12 Sobic.005G071900 expressed protein K13457: RPM1, disease resistance protein RPM1
13 Sobic.006G009700 expressed protein -
14 Sobic.005G066300 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
15 Sobic.009G015166 - -
16 Sobic.003G296500 leucine rich repeat family protein, putative, expressed -
17 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G238500 similar to Putative uncharacterized protein(PubMedID : 29862293)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
19 Sobic.007G172500 zinc finger family protein, putative, expressed -
20 Sobic.008G133000 expressed protein -


Gene co-expression network
sample Sobic006G009500 Sobic006G009500 Sobic010G220300 Sobic010G220300 Sobic006G009500--Sobic010G220300 Sobic003G052100 Sobic003G052100 Sobic006G009500--Sobic003G052100 Sobic001G402400 Sobic001G402400 Sobic006G009500--Sobic001G402400 Sobic006G108300 Sobic006G108300 Sobic006G009500--Sobic006G108300 Sobic004G312500 Sobic004G312500 Sobic006G009500--Sobic004G312500 Sobic007G041600 Sobic007G041600 Sobic006G009500--Sobic007G041600 Sobic005G107500 Sobic005G107500 Sobic006G009500--Sobic005G107500 Sobic007G020700 Sobic007G020700 Sobic006G009500--Sobic007G020700 Sobic002G411000 Sobic002G411000 Sobic006G009500--Sobic002G411000 Sobic010G220300--Sobic007G041600 Sobic010G220300--Sobic007G020700 Sobic010G220300--Sobic006G009500 Sobic010G220300--Sobic004G312500 Sobic009G079900 Sobic009G079900 Sobic010G220300--Sobic009G079900 Sobic010G220300--Sobic001G402400 Sobic005G219700 Sobic005G219700 Sobic010G220300--Sobic005G219700 Sobic005G071900 Sobic005G071900 Sobic010G220300--Sobic005G071900 Sobic008G133000 Sobic008G133000 Sobic010G220300--Sobic008G133000 Sobic003G052100--Sobic001G402400 Sobic003G052100--Sobic007G041600 Sobic002G275500 Sobic002G275500 Sobic003G052100--Sobic002G275500 Sobic003G052100--Sobic010G220300 Sobic003G052100--Sobic006G009500 Sobic003G052100--Sobic009G079900 Sobic003G296500 Sobic003G296500 Sobic003G052100--Sobic003G296500 Sobic005G231300 Sobic005G231300 Sobic003G052100--Sobic005G231300 Sobic004G271500 Sobic004G271500 Sobic003G052100--Sobic004G271500 Sobic003G270400 Sobic003G270400 Sobic001G402400--Sobic003G270400 Sobic001G402400--Sobic003G052100 Sobic001G402400--Sobic002G275500 Sobic001G402400--Sobic003G296500 Sobic001G402400--Sobic010G220300 Sobic008G014700 Sobic008G014700 Sobic001G402400--Sobic008G014700 Sobic005G057000 Sobic005G057000 Sobic001G402400--Sobic005G057000 Sobic002G376100 Sobic002G376100 Sobic001G402400--Sobic002G376100 Sobic001G402400--Sobic006G009500 Sobic006G108300--Sobic004G312500 Sobic006G108300--Sobic005G071900 Sobic007G154100 Sobic007G154100 Sobic006G108300--Sobic007G154100 Sobic006G108300--Sobic002G411000 Sobic006G009700 Sobic006G009700 Sobic006G108300--Sobic006G009700 Sobic003G079100 Sobic003G079100 Sobic006G108300--Sobic003G079100 Sobic006G209000 Sobic006G209000 Sobic006G108300--Sobic006G209000 Sobic002G029600 Sobic002G029600 Sobic006G108300--Sobic002G029600 Sobic002G019100 Sobic002G019100 Sobic006G108300--Sobic002G019100 Sobic004G312500--Sobic005G071900 Sobic004G312500--Sobic006G108300 Sobic005G110511 Sobic005G110511 Sobic004G312500--Sobic005G110511 Sobic004G312500--Sobic006G009700 Sobic004G312500--Sobic007G154100 Sobic005G066500 Sobic005G066500 Sobic004G312500--Sobic005G066500 Sobic008G138700 Sobic008G138700 Sobic004G312500--Sobic008G138700 Sobic005G065700 Sobic005G065700 Sobic004G312500--Sobic005G065700 Sobic004G312500--Sobic002G411000 Sobic001G173700 Sobic001G173700 Sobic007G041600--Sobic001G173700 Sobic007G041600--Sobic003G052100 Sobic007G041600--Sobic010G220300 Sobic004G126500 Sobic004G126500 Sobic007G041600--Sobic004G126500 Sobic001G238500 Sobic001G238500 Sobic007G041600--Sobic001G238500 Sobic009G015166 Sobic009G015166 Sobic007G041600--Sobic009G015166 Sobic003G153100 Sobic003G153100 Sobic007G041600--Sobic003G153100 Sobic007G041600--Sobic009G079900 Sobic007G172500 Sobic007G172500 Sobic007G041600--Sobic007G172500 Sobic001G002800 Sobic001G002800 Sobic005G107500--Sobic001G002800 Sobic006G117500 Sobic006G117500 Sobic005G107500--Sobic006G117500 Sobic002G254900 Sobic002G254900 Sobic005G107500--Sobic002G254900 Sobic005G107500--Sobic008G133000 Sobic003G287200 Sobic003G287200 Sobic005G107500--Sobic003G287200 Sobic005G089200 Sobic005G089200 Sobic005G107500--Sobic005G089200 Sobic005G104200 Sobic005G104200 Sobic005G107500--Sobic005G104200 Sobic001G503000 Sobic001G503000 Sobic005G107500--Sobic001G503000 Sobic010G096700 Sobic010G096700 Sobic005G107500--Sobic010G096700 Sobic007G020700--Sobic002G029600 Sobic007G020700--Sobic005G071900 Sobic007G020700--Sobic006G009700 Sobic007G020700--Sobic004G312500 Sobic009G060700 Sobic009G060700 Sobic007G020700--Sobic009G060700 Sobic007G020700--Sobic002G019100 Sobic007G020700--Sobic006G108300 Sobic007G020700--Sobic009G079900 Sobic007G020700--Sobic003G079100 Sobic005G066300 Sobic005G066300 Sobic002G411000--Sobic005G066300 Sobic002G411000--Sobic006G108300 Sobic002G411000--Sobic004G312500 Sobic002G411000--Sobic005G071900 Sobic002G411000--Sobic006G009700 Sobic002G411000--Sobic005G066500 Sobic001G506700 Sobic001G506700 Sobic002G411000--Sobic001G506700 Sobic001G506600 Sobic001G506600 Sobic002G411000--Sobic001G506600 Sobic010G274400 Sobic010G274400 Sobic002G411000--Sobic010G274400
Octagon: transcription factors


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