Gene annotation
Transcriptome id Sobic.001G406700.1
Synonym Sb01g038450, TBL29, ESK1
Functional annotation expressed protein
UniProt C5WNJ0
Pfam PF14416 PF13839
Panther DB PTHR32285 PTHR32285:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55990 : Plant protein of unknown function (DUF828)
RAP-DB (Rice) LOC_Os03g18140.1 : expressed protein
MaizeGDB (Corn) Zm00025a027000 , Zm00025a037141 , Zm00025a049266 , Zm00025a001990
Brachypodium KQK10416 , KQK14489 , KQK22160 , PNT71482 , PNT71481 , KQK06763
Barley HORVU1Hr1G059380.2 , HORVU1Hr1G059380.3 , HORVU1Hr1G059380.1 , HORVU1Hr1G059380.6 , HORVU1Hr1G059380.4 , HORVU1Hr1G059380.5 , HORVU1Hr1G059720.1 , HORVU1Hr1G059720.2 , HORVU1Hr1G059720.3 , HORVU3Hr1G087740.6 , HORVU3Hr1G087740.5 , HORVU3Hr1G087740.3 , HORVU3Hr1G087740.2 , HORVU3Hr1G087740.1 , HORVU3Hr1G087740.7 , HORVU1Hr1G059760.1 , HORVU1Hr1G059760.2 , HORVU1Hr1G059760.3 , HORVU2Hr1G014140.8 , HORVU2Hr1G014140.9 , HORVU2Hr1G014140.1 , HORVU2Hr1G014140.2 , HORVU2Hr1G014140.3 , HORVU2Hr1G014140.4 , HORVU2Hr1G014140.5 , HORVU2Hr1G014140.6 , HORVU2Hr1G014140.7 , HORVU2Hr1G014140.10 , HORVU2Hr1G014140.11
Wheat TraesCS3B02G382900 , TraesCS4B02G194100 , TraesCS1B02G238600 , TraesCS1B02G238600 , TraesCS1B02G238600 , TraesCS1A02G225200 , TraesCS1A02G225200 , TraesCS1A02G225200 , TraesCS1D02G228100 , TraesCS1A02G226700 , TraesCS2D02G246500 , TraesCS2A02G086900 , TraesCS3D02G344400 , TraesCS4D02G152800 , TraesCS2B02G101600 , TraesCS3A02G350400 , TraesCS2D02G084200 , TraesCS4A02G110000 , TraesCS1B02G240700 , TraesCS1D02G226600 , TraesCS1D02G226600 , TraesCS1D02G226600 , TraesCS4D02G195000
Populus -


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cDNA sequences
Sobic.001G406700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
2 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
3 Sobic.001G399200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
4 Sobic.009G170500 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
5 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.002G167600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
7 Sobic.005G229100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
8 Sobic.007G119500 expressed protein -
9 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
10 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
11 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
12 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
13 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
14 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
15 Sobic.004G047600 plant-specific domain TIGR01627 family protein, expressed -
16 Sobic.009G162700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
17 Sobic.010G180100 transferase family protein, putative, expressed -
18 Sobic.001G362100 nodulation protein-related, putative, expressed -
19 Sobic.003G270400 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.010G022400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic001G406700 Sobic001G406700 Sobic003G387500 Sobic003G387500 Sobic001G406700--Sobic003G387500 Sobic006G144600 Sobic006G144600 Sobic001G406700--Sobic006G144600 Sobic001G399200 Sobic001G399200 Sobic001G406700--Sobic001G399200 Sobic009G170500 Sobic009G170500 Sobic001G406700--Sobic009G170500 Sobic010G232500 Sobic010G232500 Sobic001G406700--Sobic010G232500 Sobic002G167600 Sobic002G167600 Sobic001G406700--Sobic002G167600 Sobic005G229100 Sobic005G229100 Sobic001G406700--Sobic005G229100 Sobic007G119500 Sobic007G119500 Sobic001G406700--Sobic007G119500 Sobic009G246700 Sobic009G246700 Sobic001G406700--Sobic009G246700 Sobic003G387500--Sobic001G406700 Sobic003G387500--Sobic006G144600 Sobic001G224300 Sobic001G224300 Sobic003G387500--Sobic001G224300 Sobic003G387500--Sobic010G232500 Sobic003G387500--Sobic002G167600 Sobic003G387500--Sobic009G170500 Sobic009G162700 Sobic009G162700 Sobic003G387500--Sobic009G162700 Sobic002G205500 Sobic002G205500 Sobic003G387500--Sobic002G205500 Sobic009G226900 Sobic009G226900 Sobic003G387500--Sobic009G226900 Sobic006G144600--Sobic001G406700 Sobic006G144600--Sobic010G232500 Sobic006G144600--Sobic003G387500 Sobic006G144600--Sobic002G167600 Sobic006G144600--Sobic009G170500 Sobic006G144600--Sobic001G399200 Sobic006G144600--Sobic005G229100 Sobic006G144600--Sobic007G119500 Sobic007G223600 Sobic007G223600 Sobic006G144600--Sobic007G223600 Sobic001G399200--Sobic001G406700 Sobic001G399200--Sobic006G144600 Sobic001G399200--Sobic010G232500 Sobic001G399200--Sobic003G387500 Sobic001G399200--Sobic005G229100 Sobic001G362100 Sobic001G362100 Sobic001G399200--Sobic001G362100 Sobic001G399200--Sobic007G223600 Sobic006G226200 Sobic006G226200 Sobic001G399200--Sobic006G226200 Sobic001G399200--Sobic009G170500 Sobic009G170500--Sobic001G406700 Sobic009G170500--Sobic002G167600 Sobic009G170500--Sobic007G119500 Sobic009G170500--Sobic006G144600 Sobic009G170500--Sobic003G387500 Sobic006G180300 Sobic006G180300 Sobic009G170500--Sobic006G180300 Sobic004G047600 Sobic004G047600 Sobic009G170500--Sobic004G047600 Sobic008G014700 Sobic008G014700 Sobic009G170500--Sobic008G014700 Sobic009G170500--Sobic010G232500 Sobic010G232500--Sobic006G144600 Sobic010G232500--Sobic001G406700 Sobic010G232500--Sobic005G229100 Sobic010G232500--Sobic003G387500 Sobic010G232500--Sobic006G226200 Sobic010G232500--Sobic002G167600 Sobic010G232500--Sobic001G399200 Sobic003G231500 Sobic003G231500 Sobic010G232500--Sobic003G231500 Sobic010G232500--Sobic007G223600 Sobic001G360700 Sobic001G360700 Sobic002G167600--Sobic001G360700 Sobic002G167600--Sobic006G144600 Sobic002G167600--Sobic004G047600 Sobic002G167600--Sobic001G406700 Sobic002G203900 Sobic002G203900 Sobic002G167600--Sobic002G203900 Sobic002G167600--Sobic009G170500 Sobic002G254900 Sobic002G254900 Sobic002G167600--Sobic002G254900 Sobic001G072600 Sobic001G072600 Sobic002G167600--Sobic001G072600 Sobic010G180100 Sobic010G180100 Sobic002G167600--Sobic010G180100 Sobic005G229100--Sobic007G223600 Sobic005G229100--Sobic010G232500 Sobic005G229100--Sobic002G205500 Sobic005G229100--Sobic006G144600 Sobic005G229100--Sobic001G406700 Sobic002G164600 Sobic002G164600 Sobic005G229100--Sobic002G164600 Sobic005G229100--Sobic006G226200 Sobic005G229100--Sobic003G387500 Sobic005G229100--Sobic001G399200 Sobic007G119500--Sobic009G170500 Sobic003G270400 Sobic003G270400 Sobic007G119500--Sobic003G270400 Sobic007G119500--Sobic004G047600 Sobic007G119500--Sobic001G072600 Sobic007G119500--Sobic002G167600 Sobic003G378800 Sobic003G378800 Sobic007G119500--Sobic003G378800 Sobic007G119500--Sobic001G360700 Sobic007G119500--Sobic006G144600 Sobic007G119500--Sobic001G406700 Sobic001G133900 Sobic001G133900 Sobic009G246700--Sobic001G133900 Sobic009G026101 Sobic009G026101 Sobic009G246700--Sobic009G026101 Sobic009G246700--Sobic001G406700 Sobic009G246700--Sobic007G119500 Sobic009G246700--Sobic001G072600 Sobic009G246700--Sobic002G167600 Sobic009G246700--Sobic001G360700 Sobic001G460400 Sobic001G460400 Sobic009G246700--Sobic001G460400 Sobic009G246700--Sobic006G144600
Octagon: transcription factors


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