Gene annotation
Transcriptome id Sobic.009G226900.1
Synonym Sb09g027990
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
auxin-responsive protein, putative, expressed
UniProt C5YVE8
Pfam PF03188
Panther DB PTHR23130 PTHR23130:SF86
NCBI CDD KOG4293; Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G61750 : Cytochrome b561/ferric reductase transmembrane with DOMON related domain
RAP-DB (Rice) LOC_Os05g48270.1 : auxin-responsive protein, putative, expressed
MaizeGDB (Corn) Zm00025a036559 , Zm00025a028031
Brachypodium PNT70742 , KQK09200 , KQK04968 , KQK09199
Barley HORVU1Hr1G085050.7 , HORVU1Hr1G085050.6 , HORVU1Hr1G085050.5 , HORVU1Hr1G085050.4 , HORVU1Hr1G085050.3 , HORVU1Hr1G085050.2 , HORVU1Hr1G085050.1 , HORVU1Hr1G085050.9 , HORVU1Hr1G085050.8 , HORVU3Hr1G062870.4 , HORVU3Hr1G062870.5 , HORVU3Hr1G062870.6 , HORVU3Hr1G062870.7 , HORVU3Hr1G062870.1 , HORVU3Hr1G062870.2 , HORVU3Hr1G062870.3 , HORVU1Hr1G085050.11 , HORVU1Hr1G085050.10
Wheat TraesCS1B02G412100 , TraesCS3B02G300400 , TraesCS3B02G300400 , TraesCS3D02G267100 , TraesCS3A02G266900 , TraesCS1D02G393600 , TraesCS1A02G385600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G226900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G062000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
2 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
3 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
4 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
5 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
6 Sobic.006G036400 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.001G406700 expressed protein -
8 Sobic.005G087200 plant-specific domain TIGR01627 family protein, expressed K18801: glucuronoxylan 4-O-methyltransferase
9 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
10 Sobic.008G059800 expressed protein -
11 Sobic.009G048000 villin, putative, expressed K08017: advillin
12 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
13 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
14 Sobic.002G072200 expressed protein -
15 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
16 Sobic.009G026101 - -
17 Sobic.003G236701 - -
18 Sobic.003G386200 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.010G086800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.001G336700 "Involved in secondary cell wall formation. Reduced mechanical strength in culms and leaves, thinner cell walls, reduced cellulose content, increased lignin content, in the mutant. The highest gene expression level in culms. The highest expression levels in vascular bundles and in sub-epidermal regions, where developing sclerenchyma cells are located."(PubMedID : 30590744)@COBRA-like protein precursor, putative, expressed -


Gene co-expression network
sample Sobic009G226900 Sobic009G226900 Sobic003G062000 Sobic003G062000 Sobic009G226900--Sobic003G062000 Sobic001G224300 Sobic001G224300 Sobic009G226900--Sobic001G224300 Sobic003G296400 Sobic003G296400 Sobic009G226900--Sobic003G296400 Sobic002G205500 Sobic002G205500 Sobic009G226900--Sobic002G205500 Sobic003G387500 Sobic003G387500 Sobic009G226900--Sobic003G387500 Sobic006G036400 Sobic006G036400 Sobic009G226900--Sobic006G036400 Sobic001G406700 Sobic001G406700 Sobic009G226900--Sobic001G406700 Sobic005G087200 Sobic005G087200 Sobic009G226900--Sobic005G087200 Sobic006G075000 Sobic006G075000 Sobic009G226900--Sobic006G075000 Sobic003G062000--Sobic009G226900 Sobic003G062000--Sobic006G036400 Sobic010G086800 Sobic010G086800 Sobic003G062000--Sobic010G086800 Sobic003G062000--Sobic001G224300 Sobic003G062000--Sobic003G296400 Sobic002G072200 Sobic002G072200 Sobic003G062000--Sobic002G072200 Sobic003G062000--Sobic006G075000 Sobic009G032600 Sobic009G032600 Sobic003G062000--Sobic009G032600 Sobic003G386200 Sobic003G386200 Sobic003G062000--Sobic003G386200 Sobic001G224300--Sobic003G296400 Sobic001G224300--Sobic002G205500 Sobic001G224300--Sobic006G036400 Sobic001G224300--Sobic003G387500 Sobic001G224300--Sobic009G226900 Sobic007G223600 Sobic007G223600 Sobic001G224300--Sobic007G223600 Sobic009G034300 Sobic009G034300 Sobic001G224300--Sobic009G034300 Sobic004G221300 Sobic004G221300 Sobic001G224300--Sobic004G221300 Sobic001G409100 Sobic001G409100 Sobic001G224300--Sobic001G409100 Sobic003G296400--Sobic002G205500 Sobic003G296400--Sobic001G224300 Sobic003G296400--Sobic006G036400 Sobic003G296400--Sobic007G223600 Sobic006G226200 Sobic006G226200 Sobic003G296400--Sobic006G226200 Sobic003G296400--Sobic009G226900 Sobic009G048000 Sobic009G048000 Sobic003G296400--Sobic009G048000 Sobic003G296400--Sobic004G221300 Sobic003G236701 Sobic003G236701 Sobic003G296400--Sobic003G236701 Sobic002G205500--Sobic003G296400 Sobic002G205500--Sobic001G224300 Sobic002G205500--Sobic007G223600 Sobic002G205500--Sobic006G226200 Sobic005G229100 Sobic005G229100 Sobic002G205500--Sobic005G229100 Sobic002G205500--Sobic003G387500 Sobic002G205500--Sobic009G048000 Sobic002G205500--Sobic006G036400 Sobic002G205500--Sobic009G226900 Sobic003G387500--Sobic001G406700 Sobic006G144600 Sobic006G144600 Sobic003G387500--Sobic006G144600 Sobic003G387500--Sobic001G224300 Sobic010G232500 Sobic010G232500 Sobic003G387500--Sobic010G232500 Sobic002G167600 Sobic002G167600 Sobic003G387500--Sobic002G167600 Sobic009G170500 Sobic009G170500 Sobic003G387500--Sobic009G170500 Sobic009G162700 Sobic009G162700 Sobic003G387500--Sobic009G162700 Sobic003G387500--Sobic002G205500 Sobic003G387500--Sobic009G226900 Sobic006G036400--Sobic001G224300 Sobic006G036400--Sobic003G296400 Sobic006G036400--Sobic003G062000 Sobic006G036400--Sobic002G205500 Sobic006G036400--Sobic001G409100 Sobic006G036400--Sobic009G034300 Sobic006G036400--Sobic009G226900 Sobic001G360800 Sobic001G360800 Sobic006G036400--Sobic001G360800 Sobic006G036400--Sobic004G221300 Sobic001G406700--Sobic003G387500 Sobic001G406700--Sobic006G144600 Sobic001G399200 Sobic001G399200 Sobic001G406700--Sobic001G399200 Sobic001G406700--Sobic009G170500 Sobic001G406700--Sobic010G232500 Sobic001G406700--Sobic002G167600 Sobic001G406700--Sobic005G229100 Sobic007G119500 Sobic007G119500 Sobic001G406700--Sobic007G119500 Sobic009G246700 Sobic009G246700 Sobic001G406700--Sobic009G246700 Sobic005G087200--Sobic003G387500 Sobic005G087200--Sobic009G226900 Sobic002G164600 Sobic002G164600 Sobic005G087200--Sobic002G164600 Sobic005G087200--Sobic003G236701 Sobic003G112200 Sobic003G112200 Sobic005G087200--Sobic003G112200 Sobic001G336700 Sobic001G336700 Sobic005G087200--Sobic001G336700 Sobic005G087200--Sobic001G406700 Sobic009G241600 Sobic009G241600 Sobic005G087200--Sobic009G241600 Sobic008G112200 Sobic008G112200 Sobic005G087200--Sobic008G112200 Sobic010G096100 Sobic010G096100 Sobic006G075000--Sobic010G096100 Sobic001G208600 Sobic001G208600 Sobic006G075000--Sobic001G208600 Sobic001G484000 Sobic001G484000 Sobic006G075000--Sobic001G484000 Sobic006G075000--Sobic009G226900 Sobic006G075000--Sobic002G072200 Sobic003G099166 Sobic003G099166 Sobic006G075000--Sobic003G099166 Sobic003G352700 Sobic003G352700 Sobic006G075000--Sobic003G352700 Sobic009G026101 Sobic009G026101 Sobic006G075000--Sobic009G026101 Sobic002G338400 Sobic002G338400 Sobic006G075000--Sobic002G338400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.