Gene annotation
Transcriptome id Sobic.003G386200.1,Sobic.003G386200.2
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6Q7I3
Pfam PF12906 PF12428
Panther DB PTHR23012 PTHR23012:SF94
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G02960 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os01g66970.2 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026453 , Zm00025a039459 , Zm00025a050686
Brachypodium KQK10998 , KQK10999
Barley -
Wheat TraesCS3B02G432700 , TraesCS3B02G432700 , TraesCS3B02G432700 , TraesCS3A02G399700 , TraesCS3A02G399700 , TraesCS3D02G393800 , TraesCS3D02G393800 , TraesCS3D02G393800 , TraesCS3D02G393800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G036400 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
3 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
4 Sobic.003G062000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
5 Sobic.003G427900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
6 Sobic.009G162500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K05280: flavonoid 3'-monooxygenase
7 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
8 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
9 Sobic.001G534532 - -
10 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
11 Sobic.010G086800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.005G110442 - K00432: gpx, btuE, glutathione peroxidase
13 Sobic.004G163600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.009G032600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.002G072200 expressed protein -
16 Sobic.008G059800 expressed protein -
17 Sobic.008G164900 membrane associated DUF588 domain containing protein, putative, expressed -
18 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
19 Sobic.003G099166 - -
20 Sobic.001G468300 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I


Gene co-expression network
sample Sobic003G386200 Sobic003G386200 Sobic006G036400 Sobic006G036400 Sobic003G386200--Sobic006G036400 Sobic009G226900 Sobic009G226900 Sobic003G386200--Sobic009G226900 Sobic003G296400 Sobic003G296400 Sobic003G386200--Sobic003G296400 Sobic003G062000 Sobic003G062000 Sobic003G386200--Sobic003G062000 Sobic003G427900 Sobic003G427900 Sobic003G386200--Sobic003G427900 Sobic009G162500 Sobic009G162500 Sobic003G386200--Sobic009G162500 Sobic002G205500 Sobic002G205500 Sobic003G386200--Sobic002G205500 Sobic001G224300 Sobic001G224300 Sobic003G386200--Sobic001G224300 Sobic001G534532 Sobic001G534532 Sobic003G386200--Sobic001G534532 Sobic006G036400--Sobic001G224300 Sobic006G036400--Sobic003G296400 Sobic006G036400--Sobic003G062000 Sobic006G036400--Sobic002G205500 Sobic001G409100 Sobic001G409100 Sobic006G036400--Sobic001G409100 Sobic009G034300 Sobic009G034300 Sobic006G036400--Sobic009G034300 Sobic006G036400--Sobic009G226900 Sobic001G360800 Sobic001G360800 Sobic006G036400--Sobic001G360800 Sobic004G221300 Sobic004G221300 Sobic006G036400--Sobic004G221300 Sobic009G226900--Sobic003G062000 Sobic009G226900--Sobic001G224300 Sobic009G226900--Sobic003G296400 Sobic009G226900--Sobic002G205500 Sobic003G387500 Sobic003G387500 Sobic009G226900--Sobic003G387500 Sobic009G226900--Sobic006G036400 Sobic001G406700 Sobic001G406700 Sobic009G226900--Sobic001G406700 Sobic005G087200 Sobic005G087200 Sobic009G226900--Sobic005G087200 Sobic006G075000 Sobic006G075000 Sobic009G226900--Sobic006G075000 Sobic003G296400--Sobic002G205500 Sobic003G296400--Sobic001G224300 Sobic003G296400--Sobic006G036400 Sobic007G223600 Sobic007G223600 Sobic003G296400--Sobic007G223600 Sobic006G226200 Sobic006G226200 Sobic003G296400--Sobic006G226200 Sobic003G296400--Sobic009G226900 Sobic009G048000 Sobic009G048000 Sobic003G296400--Sobic009G048000 Sobic003G296400--Sobic004G221300 Sobic003G236701 Sobic003G236701 Sobic003G296400--Sobic003G236701 Sobic003G062000--Sobic009G226900 Sobic003G062000--Sobic006G036400 Sobic010G086800 Sobic010G086800 Sobic003G062000--Sobic010G086800 Sobic003G062000--Sobic001G224300 Sobic003G062000--Sobic003G296400 Sobic002G072200 Sobic002G072200 Sobic003G062000--Sobic002G072200 Sobic003G062000--Sobic006G075000 Sobic009G032600 Sobic009G032600 Sobic003G062000--Sobic009G032600 Sobic003G062000--Sobic003G386200 Sobic003G352800 Sobic003G352800 Sobic003G427900--Sobic003G352800 Sobic003G427900--Sobic010G086800 Sobic003G427900--Sobic003G296400 Sobic006G066500 Sobic006G066500 Sobic003G427900--Sobic006G066500 Sobic003G427900--Sobic009G226900 Sobic001G468300 Sobic001G468300 Sobic003G427900--Sobic001G468300 Sobic003G427900--Sobic006G036400 Sobic003G427900--Sobic003G386200 Sobic003G427900--Sobic003G062000 Sobic009G162500--Sobic003G296400 Sobic009G162500--Sobic002G205500 Sobic009G162500--Sobic003G062000 Sobic003G151300 Sobic003G151300 Sobic009G162500--Sobic003G151300 Sobic002G003200 Sobic002G003200 Sobic009G162500--Sobic002G003200 Sobic003G366300 Sobic003G366300 Sobic009G162500--Sobic003G366300 Sobic001G535400 Sobic001G535400 Sobic009G162500--Sobic001G535400 Sobic009G153800 Sobic009G153800 Sobic009G162500--Sobic009G153800 Sobic009G162500--Sobic009G032600 Sobic002G205500--Sobic003G296400 Sobic002G205500--Sobic001G224300 Sobic002G205500--Sobic007G223600 Sobic002G205500--Sobic006G226200 Sobic005G229100 Sobic005G229100 Sobic002G205500--Sobic005G229100 Sobic002G205500--Sobic003G387500 Sobic002G205500--Sobic009G048000 Sobic002G205500--Sobic006G036400 Sobic002G205500--Sobic009G226900 Sobic001G224300--Sobic003G296400 Sobic001G224300--Sobic002G205500 Sobic001G224300--Sobic006G036400 Sobic001G224300--Sobic003G387500 Sobic001G224300--Sobic009G226900 Sobic001G224300--Sobic007G223600 Sobic001G224300--Sobic009G034300 Sobic001G224300--Sobic004G221300 Sobic001G224300--Sobic001G409100 Sobic001G534532--Sobic003G386200 Sobic001G534532--Sobic002G072200 Sobic001G534532--Sobic009G226900 Sobic001G534532--Sobic003G062000 Sobic001G534532--Sobic009G032600 Sobic001G534532--Sobic003G427900 Sobic004G344200 Sobic004G344200 Sobic001G534532--Sobic004G344200 Sobic001G534532--Sobic009G162500 Sobic006G001000 Sobic006G001000 Sobic001G534532--Sobic006G001000
Octagon: transcription factors


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