Gene annotation
Transcriptome id Sobic.001G468300.1
Synonym
Functional annotation methyladenine glycosylase, putative, expressed
UniProt A0A1B6QPU9
Pfam PF03352
Panther DB PTHR31116 PTHR31116:SF5
NCBI CDD -
KEGG Orthology K01246; DNA-3-methyladenine glycosylase I
Gene Ontology GO:0008725; DNA-3-methyladenine glycosylase activity GO:0006284base-excision repair


Orthologs (automatic annotation)
TAIR AT1G75090 : DNA glycosylase superfamily protein
RAP-DB (Rice) LOC_Os03g10220.1 : methyladenine glycosylase, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK23088
Barley HORVU4Hr1G070650.4 , HORVU4Hr1G070650.6 , HORVU4Hr1G070650.7 , HORVU4Hr1G070650.1 , HORVU4Hr1G070650.2 , HORVU4Hr1G070650.3
Wheat TraesCS4A02G040700 , TraesCS4D02G261700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G236701 - -
2 Sobic.009G048000 villin, putative, expressed K08017: advillin
3 Sobic.006G066500 expressed protein -
4 Sobic.010G199700 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
5 Sobic.009G241600 Expressed in older stem(PubMedID : 28649278)@zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K18753: butyrate response factor
6 Sobic.002G332300 expressed protein -
7 Sobic.003G112200 Cupin domain containing protein, expressed -
8 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
9 Sobic.008G059800 expressed protein -
10 Sobic.008G112200 Expressed in middle stem(PubMedID : 28649278)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
12 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
13 Sobic.003G220000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed -
14 Sobic.001G238600 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.004G125400 isochorismatase family protein, putative, expressed -
16 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
17 Sobic.001G422300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
18 Sobic.003G352800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Protein L-ascorbate oxidase precursor (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
19 Sobic.003G427900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
20 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -


Gene co-expression network
sample Sobic001G468300 Sobic001G468300 Sobic003G236701 Sobic003G236701 Sobic001G468300--Sobic003G236701 Sobic009G048000 Sobic009G048000 Sobic001G468300--Sobic009G048000 Sobic006G066500 Sobic006G066500 Sobic001G468300--Sobic006G066500 Sobic010G199700 Sobic010G199700 Sobic001G468300--Sobic010G199700 Sobic009G241600 Sobic009G241600 Sobic001G468300--Sobic009G241600 Sobic002G332300 Sobic002G332300 Sobic001G468300--Sobic002G332300 Sobic003G112200 Sobic003G112200 Sobic001G468300--Sobic003G112200 Sobic006G226200 Sobic006G226200 Sobic001G468300--Sobic006G226200 Sobic008G059800 Sobic008G059800 Sobic001G468300--Sobic008G059800 Sobic003G236701--Sobic006G066500 Sobic002G164600 Sobic002G164600 Sobic003G236701--Sobic002G164600 Sobic003G236701--Sobic009G241600 Sobic003G236701--Sobic006G226200 Sobic003G236701--Sobic003G112200 Sobic007G223600 Sobic007G223600 Sobic003G236701--Sobic007G223600 Sobic003G236701--Sobic008G059800 Sobic003G231500 Sobic003G231500 Sobic003G236701--Sobic003G231500 Sobic001G238600 Sobic001G238600 Sobic003G236701--Sobic001G238600 Sobic009G048000--Sobic006G226200 Sobic003G296400 Sobic003G296400 Sobic009G048000--Sobic003G296400 Sobic002G205500 Sobic002G205500 Sobic009G048000--Sobic002G205500 Sobic009G048000--Sobic003G236701 Sobic009G048000--Sobic001G468300 Sobic009G226900 Sobic009G226900 Sobic009G048000--Sobic009G226900 Sobic001G224300 Sobic001G224300 Sobic009G048000--Sobic001G224300 Sobic009G048000--Sobic003G112200 Sobic009G048000--Sobic007G223600 Sobic006G066500--Sobic003G236701 Sobic001G422300 Sobic001G422300 Sobic006G066500--Sobic001G422300 Sobic006G066500--Sobic006G226200 Sobic006G066500--Sobic003G112200 Sobic004G125400 Sobic004G125400 Sobic006G066500--Sobic004G125400 Sobic006G066500--Sobic001G238600 Sobic006G066500--Sobic003G231500 Sobic003G220000 Sobic003G220000 Sobic006G066500--Sobic003G220000 Sobic008G010400 Sobic008G010400 Sobic006G066500--Sobic008G010400 Sobic010G199700--Sobic009G241600 Sobic008G112200 Sobic008G112200 Sobic010G199700--Sobic008G112200 Sobic007G027200 Sobic007G027200 Sobic010G199700--Sobic007G027200 Sobic010G199700--Sobic008G059800 Sobic003G153400 Sobic003G153400 Sobic010G199700--Sobic003G153400 Sobic010G199700--Sobic001G468300 Sobic010G199700--Sobic003G236701 Sobic006G166800 Sobic006G166800 Sobic010G199700--Sobic006G166800 Sobic009G153800 Sobic009G153800 Sobic010G199700--Sobic009G153800 Sobic009G241600--Sobic003G236701 Sobic009G241600--Sobic007G027200 Sobic009G241600--Sobic006G066500 Sobic009G241600--Sobic008G059800 Sobic009G241600--Sobic002G164600 Sobic009G241600--Sobic010G199700 Sobic009G241600--Sobic008G112200 Sobic009G241600--Sobic003G112200 Sobic009G241600--Sobic006G166800 Sobic008G087300 Sobic008G087300 Sobic002G332300--Sobic008G087300 Sobic004G167000 Sobic004G167000 Sobic002G332300--Sobic004G167000 Sobic002G332300--Sobic001G238600 Sobic010G180000 Sobic010G180000 Sobic002G332300--Sobic010G180000 Sobic007G175400 Sobic007G175400 Sobic002G332300--Sobic007G175400 Sobic008G008200 Sobic008G008200 Sobic002G332300--Sobic008G008200 Sobic008G126000 Sobic008G126000 Sobic002G332300--Sobic008G126000 Sobic001G266900 Sobic001G266900 Sobic002G332300--Sobic001G266900 Sobic009G239800 Sobic009G239800 Sobic002G332300--Sobic009G239800 Sobic003G112200--Sobic006G066500 Sobic003G112200--Sobic003G236701 Sobic003G112200--Sobic006G226200 Sobic003G112200--Sobic002G164600 Sobic003G112200--Sobic001G422300 Sobic003G112200--Sobic003G231500 Sobic003G112200--Sobic009G241600 Sobic003G112200--Sobic004G125400 Sobic003G112200--Sobic003G220000 Sobic006G226200--Sobic003G236701 Sobic006G226200--Sobic006G066500 Sobic006G226200--Sobic007G223600 Sobic006G226200--Sobic003G112200 Sobic006G226200--Sobic002G164600 Sobic006G226200--Sobic003G296400 Sobic006G226200--Sobic009G048000 Sobic006G226200--Sobic003G231500 Sobic006G226200--Sobic002G205500 Sobic008G059800--Sobic002G164600 Sobic008G059800--Sobic003G236701 Sobic008G059800--Sobic009G241600 Sobic008G059800--Sobic009G153800 Sobic008G059800--Sobic010G199700 Sobic008G059800--Sobic007G223600 Sobic008G059800--Sobic008G112200 Sobic008G059800--Sobic009G226900 Sobic008G059800--Sobic006G066500
Octagon: transcription factors


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