Gene annotation
Transcriptome id Sobic.001G422300.1
Synonym ATLAC17, Sb01g039690, LAC17
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
laccase precursor protein, putative, expressed
UniProt C5WQ07
Pfam PF00394 PF07732 PF07731
Panther DB PTHR11709 PTHR11709:SF25
NCBI CDD -
KEGG Orthology K05909; laccase
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT5G60020 : laccase 17
RAP-DB (Rice) LOC_Os03g16610.1 : laccase precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a043896 , Zm00025a026896 , Zm00025a026887 , Zm00025a001815
Brachypodium KQK22351 , KQK05916 , PNT77675 , KQK10527 , KQK10526
Barley HORVU1Hr1G072530.2 , HORVU1Hr1G072530.3 , HORVU1Hr1G072530.1 , HORVU1Hr1G072530.6 , HORVU1Hr1G072530.7 , HORVU1Hr1G072530.4 , HORVU1Hr1G072530.5 , HORVU3Hr1G086200.5 , HORVU3Hr1G086200.4 , HORVU1Hr1G072530.8 , HORVU1Hr1G072530.9 , HORVU3Hr1G086200.1 , HORVU3Hr1G086200.3 , HORVU3Hr1G086200.2 , HORVU3Hr1G086200.9 , HORVU3Hr1G086200.8 , HORVU3Hr1G086200.7 , HORVU3Hr1G086200.6 , HORVU1Hr1G072470.8 , HORVU7Hr1G039310.1 , HORVU4Hr1G059930.4 , HORVU4Hr1G059930.5 , HORVU4Hr1G059930.6 , HORVU4Hr1G059930.7 , HORVU4Hr1G059930.1 , HORVU4Hr1G059930.2 , HORVU4Hr1G059930.3 , HORVU4Hr1G059930.8 , HORVU4Hr1G059930.9 , HORVU4Hr1G059930.12 , HORVU4Hr1G059930.13 , HORVU4Hr1G059930.10 , HORVU4Hr1G059930.11 , HORVU7Hr1G039250.8 , HORVU7Hr1G039250.9 , HORVU7Hr1G096350.3 , HORVU1Hr1G072470.9 , HORVU7Hr1G096350.1 , HORVU7Hr1G039250.4 , HORVU7Hr1G096350.7 , HORVU7Hr1G096350.4 , HORVU7Hr1G096350.5 , HORVU1Hr1G072470.3 , HORVU1Hr1G072470.2 , HORVU1Hr1G072470.1 , HORVU1Hr1G072470.7 , HORVU1Hr1G072470.6 , HORVU1Hr1G072470.5 , HORVU1Hr1G072470.4 , HORVU7Hr1G096350.2 , HORVU7Hr1G039250.1 , HORVU7Hr1G039250.2 , HORVU7Hr1G039250.3 , HORVU7Hr1G096350.6 , HORVU7Hr1G039250.5 , HORVU7Hr1G039250.6 , HORVU7Hr1G039250.7 , HORVU1Hr1G072470.10
Wheat TraesCS1B02G293100 , TraesCS4B02G208000 , TraesCS4B02G208000 , TraesCS3B02G393500 , TraesCS4A02G096400 , TraesCS3D02G354200 , TraesCS3B02G392700 , TraesCS3A02G360400 , TraesCS7B02G097100 , TraesCS7D02G192900 , TraesCS1D02G283000 , TraesCS3A02G360600 , TraesCS4D02G208900 , TraesCS1A02G283900 , TraesCS7D02G193100 , TraesCS3B02G393000
Populus -


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cDNA sequences
Sobic.001G422300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G010400 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.010G152900 beta-D-xylosidase, putative, expressed -
3 Sobic.007G175400 carrier, putative, expressed -
4 Sobic.005G011100 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.006G066500 expressed protein -
6 Sobic.004G125400 isochorismatase family protein, putative, expressed -
7 Sobic.001G238600 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.009G069100 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
9 Sobic.004G293800 thioesterase family protein, putative, expressed -
10 Sobic.007G195500 thiol protease SEN102 precursor, putative, expressed -
11 Sobic.010G108100 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
12 Sobic.006G125600 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
13 Sobic.010G108001 - K15397: 3-ketoacyl-CoA synthase
14 Sobic.003G071100 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
15 Sobic.005G135800 chalcone and stilbene synthases, putative, expressed -
16 Sobic.010G124500 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
17 Sobic.003G040400 cytochrome P450, putative, expressed -
18 Sobic.001G332050 - -
19 Sobic.001G332050 - -
20 Sobic.001G332050 - -


Gene co-expression network
sample Sobic001G422300 Sobic001G422300 Sobic008G010400 Sobic008G010400 Sobic001G422300--Sobic008G010400 Sobic010G152900 Sobic010G152900 Sobic001G422300--Sobic010G152900 Sobic007G175400 Sobic007G175400 Sobic001G422300--Sobic007G175400 Sobic005G011100 Sobic005G011100 Sobic001G422300--Sobic005G011100 Sobic006G066500 Sobic006G066500 Sobic001G422300--Sobic006G066500 Sobic004G125400 Sobic004G125400 Sobic001G422300--Sobic004G125400 Sobic001G238600 Sobic001G238600 Sobic001G422300--Sobic001G238600 Sobic009G069100 Sobic009G069100 Sobic001G422300--Sobic009G069100 Sobic004G293800 Sobic004G293800 Sobic001G422300--Sobic004G293800 Sobic008G010400--Sobic001G422300 Sobic008G010400--Sobic004G125400 Sobic008G010400--Sobic005G011100 Sobic008G010400--Sobic001G238600 Sobic008G010400--Sobic010G152900 Sobic008G010400--Sobic006G066500 Sobic008G010400--Sobic007G175400 Sobic002G332300 Sobic002G332300 Sobic008G010400--Sobic002G332300 Sobic010G232000 Sobic010G232000 Sobic008G010400--Sobic010G232000 Sobic003G239400 Sobic003G239400 Sobic010G152900--Sobic003G239400 Sobic003G206300 Sobic003G206300 Sobic010G152900--Sobic003G206300 Sobic010G200000 Sobic010G200000 Sobic010G152900--Sobic010G200000 Sobic009G116300 Sobic009G116300 Sobic010G152900--Sobic009G116300 Sobic001G332050 Sobic001G332050 Sobic010G152900--Sobic001G332050 Sobic007G175400--Sobic010G152900 Sobic003G040400 Sobic003G040400 Sobic007G175400--Sobic003G040400 Sobic007G175400--Sobic009G116300 Sobic007G175400--Sobic001G332050 Sobic005G011100--Sobic010G152900 Sobic005G011100--Sobic008G010400 Sobic005G011100--Sobic001G422300 Sobic005G011100--Sobic007G175400 Sobic005G011100--Sobic001G332050 Sobic003G236701 Sobic003G236701 Sobic006G066500--Sobic003G236701 Sobic006G066500--Sobic001G422300 Sobic006G226200 Sobic006G226200 Sobic006G066500--Sobic006G226200 Sobic003G112200 Sobic003G112200 Sobic006G066500--Sobic003G112200 Sobic006G066500--Sobic004G125400 Sobic006G066500--Sobic001G238600 Sobic003G231500 Sobic003G231500 Sobic006G066500--Sobic003G231500 Sobic003G220000 Sobic003G220000 Sobic006G066500--Sobic003G220000 Sobic006G066500--Sobic008G010400 Sobic004G125400--Sobic008G010400 Sobic004G125400--Sobic001G422300 Sobic004G125400--Sobic006G066500 Sobic004G125400--Sobic002G332300 Sobic004G125400--Sobic010G232000 Sobic004G125400--Sobic001G238600 Sobic004G125400--Sobic005G011100 Sobic004G125400--Sobic003G112200 Sobic004G125400--Sobic006G226200 Sobic001G238600--Sobic003G231500 Sobic001G238600--Sobic001G422300 Sobic001G238600--Sobic002G332300 Sobic001G238600--Sobic007G175400 Sobic001G238600--Sobic003G220000 Sobic001G238600--Sobic006G066500 Sobic001G238600--Sobic010G232000 Sobic001G238600--Sobic008G010400 Sobic001G238600--Sobic005G011100 Sobic009G069100--Sobic001G332050 Sobic010G108001 Sobic010G108001 Sobic004G293800--Sobic010G108001 Sobic003G071100 Sobic003G071100 Sobic004G293800--Sobic003G071100 Sobic005G135800 Sobic005G135800 Sobic004G293800--Sobic005G135800 Sobic007G195500 Sobic007G195500 Sobic004G293800--Sobic007G195500 Sobic010G124500 Sobic010G124500 Sobic004G293800--Sobic010G124500 Sobic010G108100 Sobic010G108100 Sobic004G293800--Sobic010G108100 Sobic003G071300 Sobic003G071300 Sobic004G293800--Sobic003G071300 Sobic005G135400 Sobic005G135400 Sobic004G293800--Sobic005G135400 Sobic010G108200 Sobic010G108200 Sobic004G293800--Sobic010G108200
Octagon: transcription factors


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