Gene annotation
Transcriptome id Sobic.001G238600.1
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6QKL2
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF130
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G12760 : Zinc finger, C3HC4 type (RING finger) family protein
RAP-DB (Rice) LOC_Os10g30310.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006818 , Zm00025a017743
Brachypodium KQJ96853
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G231500 pectinesterase, putative, expressed K01051: pectinesterase
2 Sobic.001G422300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
3 Sobic.002G332300 expressed protein -
4 Sobic.007G175400 carrier, putative, expressed -
5 Sobic.003G220000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed -
6 Sobic.006G066500 expressed protein -
7 Sobic.010G232000 RIC10, putative, expressed -
8 Sobic.008G010400 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.005G011100 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.008G126000 calmodulin binding protein, putative, expressed -
11 Sobic.010G152900 beta-D-xylosidase, putative, expressed -
12 Sobic.003G236701 - -
13 Sobic.004G125400 isochorismatase family protein, putative, expressed -
14 Sobic.009G069100 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
15 Sobic.003G040400 cytochrome P450, putative, expressed -
16 Sobic.010G180000 - -
17 Sobic.001G266900 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.003G128100 expressed protein -
19 Sobic.005G110538 - K08818: cell division cycle 2-like
20 Sobic.008G138300 expressed protein -


Gene co-expression network
sample Sobic001G238600 Sobic001G238600 Sobic003G231500 Sobic003G231500 Sobic001G238600--Sobic003G231500 Sobic001G422300 Sobic001G422300 Sobic001G238600--Sobic001G422300 Sobic002G332300 Sobic002G332300 Sobic001G238600--Sobic002G332300 Sobic007G175400 Sobic007G175400 Sobic001G238600--Sobic007G175400 Sobic003G220000 Sobic003G220000 Sobic001G238600--Sobic003G220000 Sobic006G066500 Sobic006G066500 Sobic001G238600--Sobic006G066500 Sobic010G232000 Sobic010G232000 Sobic001G238600--Sobic010G232000 Sobic008G010400 Sobic008G010400 Sobic001G238600--Sobic008G010400 Sobic005G011100 Sobic005G011100 Sobic001G238600--Sobic005G011100 Sobic003G231500--Sobic001G238600 Sobic003G236701 Sobic003G236701 Sobic003G231500--Sobic003G236701 Sobic003G231500--Sobic006G066500 Sobic003G231500--Sobic001G422300 Sobic006G226200 Sobic006G226200 Sobic003G231500--Sobic006G226200 Sobic003G231500--Sobic003G220000 Sobic006G209300 Sobic006G209300 Sobic003G231500--Sobic006G209300 Sobic003G231500--Sobic007G175400 Sobic008G126000 Sobic008G126000 Sobic003G231500--Sobic008G126000 Sobic001G422300--Sobic008G010400 Sobic010G152900 Sobic010G152900 Sobic001G422300--Sobic010G152900 Sobic001G422300--Sobic007G175400 Sobic001G422300--Sobic005G011100 Sobic001G422300--Sobic006G066500 Sobic004G125400 Sobic004G125400 Sobic001G422300--Sobic004G125400 Sobic001G422300--Sobic001G238600 Sobic009G069100 Sobic009G069100 Sobic001G422300--Sobic009G069100 Sobic004G293800 Sobic004G293800 Sobic001G422300--Sobic004G293800 Sobic008G087300 Sobic008G087300 Sobic002G332300--Sobic008G087300 Sobic004G167000 Sobic004G167000 Sobic002G332300--Sobic004G167000 Sobic002G332300--Sobic001G238600 Sobic010G180000 Sobic010G180000 Sobic002G332300--Sobic010G180000 Sobic002G332300--Sobic007G175400 Sobic008G008200 Sobic008G008200 Sobic002G332300--Sobic008G008200 Sobic002G332300--Sobic008G126000 Sobic001G266900 Sobic001G266900 Sobic002G332300--Sobic001G266900 Sobic009G239800 Sobic009G239800 Sobic002G332300--Sobic009G239800 Sobic007G175400--Sobic010G152900 Sobic003G040400 Sobic003G040400 Sobic007G175400--Sobic003G040400 Sobic009G116300 Sobic009G116300 Sobic007G175400--Sobic009G116300 Sobic001G332050 Sobic001G332050 Sobic007G175400--Sobic001G332050 Sobic003G220000--Sobic001G238600 Sobic003G220000--Sobic006G066500 Sobic003G220000--Sobic003G231500 Sobic003G220000--Sobic001G422300 Sobic003G220000--Sobic008G010400 Sobic003G112200 Sobic003G112200 Sobic003G220000--Sobic003G112200 Sobic003G220000--Sobic006G226200 Sobic003G220000--Sobic003G236701 Sobic003G220000--Sobic007G175400 Sobic006G066500--Sobic003G236701 Sobic006G066500--Sobic001G422300 Sobic006G066500--Sobic006G226200 Sobic006G066500--Sobic003G112200 Sobic006G066500--Sobic004G125400 Sobic006G066500--Sobic001G238600 Sobic006G066500--Sobic003G231500 Sobic006G066500--Sobic003G220000 Sobic006G066500--Sobic008G010400 Sobic010G232000--Sobic009G239800 Sobic010G232000--Sobic002G332300 Sobic010G232000--Sobic001G422300 Sobic010G232000--Sobic001G238600 Sobic010G232000--Sobic008G126000 Sobic010G232000--Sobic007G175400 Sobic010G108100 Sobic010G108100 Sobic010G232000--Sobic010G108100 Sobic010G232000--Sobic004G125400 Sobic010G108600 Sobic010G108600 Sobic010G232000--Sobic010G108600 Sobic008G010400--Sobic001G422300 Sobic008G010400--Sobic004G125400 Sobic008G010400--Sobic005G011100 Sobic008G010400--Sobic001G238600 Sobic008G010400--Sobic010G152900 Sobic008G010400--Sobic006G066500 Sobic008G010400--Sobic007G175400 Sobic008G010400--Sobic002G332300 Sobic008G010400--Sobic010G232000 Sobic005G011100--Sobic010G152900 Sobic005G011100--Sobic008G010400 Sobic005G011100--Sobic001G422300 Sobic005G011100--Sobic007G175400 Sobic005G011100--Sobic001G332050
Octagon: transcription factors


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