Gene annotation
Transcriptome id Sobic.003G220000.1
Synonym Sb03g027870
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ABC-2 type transporter domain containing protein, expressed
UniProt C5XR13
Pfam PF00005 PF01061
Panther DB PTHR19241 PTHR19241:SF182
NCBI CDD KOG0061; Transporter, ABC superfamily (Breast cancer resistance protein)
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G53270 : ABC-2 type transporter family protein
RAP-DB (Rice) LOC_Os01g42900.1 : ABC-2 type transporter domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038505 , Zm00025a028734 , Zm00025a049966
Brachypodium PNT72389
Barley HORVU3Hr1G054160.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G238600 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.006G066500 expressed protein -
3 Sobic.003G231500 pectinesterase, putative, expressed K01051: pectinesterase
4 Sobic.001G422300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
5 Sobic.008G010400 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.003G112200 Cupin domain containing protein, expressed -
7 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
8 Sobic.003G236701 - -
9 Sobic.007G175400 carrier, putative, expressed -
10 Sobic.002G332300 expressed protein -
11 Sobic.003G128100 expressed protein -
12 Sobic.004G125400 isochorismatase family protein, putative, expressed -
13 Sobic.010G232000 RIC10, putative, expressed -
14 Sobic.001G468300 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
15 Sobic.005G011100 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.009G048000 villin, putative, expressed K08017: advillin
17 Sobic.009G241600 Expressed in older stem(PubMedID : 28649278)@zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K18753: butyrate response factor
18 Sobic.001G336700 "Involved in secondary cell wall formation. Reduced mechanical strength in culms and leaves, thinner cell walls, reduced cellulose content, increased lignin content, in the mutant. The highest gene expression level in culms. The highest expression levels in vascular bundles and in sub-epidermal regions, where developing sclerenchyma cells are located."(PubMedID : 30590744)@COBRA-like protein precursor, putative, expressed -
19 Sobic.005G058700 expressed protein -
20 Sobic.010G152900 beta-D-xylosidase, putative, expressed -


Gene co-expression network
sample Sobic003G220000 Sobic003G220000 Sobic001G238600 Sobic001G238600 Sobic003G220000--Sobic001G238600 Sobic006G066500 Sobic006G066500 Sobic003G220000--Sobic006G066500 Sobic003G231500 Sobic003G231500 Sobic003G220000--Sobic003G231500 Sobic001G422300 Sobic001G422300 Sobic003G220000--Sobic001G422300 Sobic008G010400 Sobic008G010400 Sobic003G220000--Sobic008G010400 Sobic003G112200 Sobic003G112200 Sobic003G220000--Sobic003G112200 Sobic006G226200 Sobic006G226200 Sobic003G220000--Sobic006G226200 Sobic003G236701 Sobic003G236701 Sobic003G220000--Sobic003G236701 Sobic007G175400 Sobic007G175400 Sobic003G220000--Sobic007G175400 Sobic001G238600--Sobic003G231500 Sobic001G238600--Sobic001G422300 Sobic002G332300 Sobic002G332300 Sobic001G238600--Sobic002G332300 Sobic001G238600--Sobic007G175400 Sobic001G238600--Sobic003G220000 Sobic001G238600--Sobic006G066500 Sobic010G232000 Sobic010G232000 Sobic001G238600--Sobic010G232000 Sobic001G238600--Sobic008G010400 Sobic005G011100 Sobic005G011100 Sobic001G238600--Sobic005G011100 Sobic006G066500--Sobic003G236701 Sobic006G066500--Sobic001G422300 Sobic006G066500--Sobic006G226200 Sobic006G066500--Sobic003G112200 Sobic004G125400 Sobic004G125400 Sobic006G066500--Sobic004G125400 Sobic006G066500--Sobic001G238600 Sobic006G066500--Sobic003G231500 Sobic006G066500--Sobic003G220000 Sobic006G066500--Sobic008G010400 Sobic003G231500--Sobic001G238600 Sobic003G231500--Sobic003G236701 Sobic003G231500--Sobic006G066500 Sobic003G231500--Sobic001G422300 Sobic003G231500--Sobic006G226200 Sobic003G231500--Sobic003G220000 Sobic006G209300 Sobic006G209300 Sobic003G231500--Sobic006G209300 Sobic003G231500--Sobic007G175400 Sobic008G126000 Sobic008G126000 Sobic003G231500--Sobic008G126000 Sobic001G422300--Sobic008G010400 Sobic010G152900 Sobic010G152900 Sobic001G422300--Sobic010G152900 Sobic001G422300--Sobic007G175400 Sobic001G422300--Sobic005G011100 Sobic001G422300--Sobic006G066500 Sobic001G422300--Sobic004G125400 Sobic001G422300--Sobic001G238600 Sobic009G069100 Sobic009G069100 Sobic001G422300--Sobic009G069100 Sobic004G293800 Sobic004G293800 Sobic001G422300--Sobic004G293800 Sobic008G010400--Sobic001G422300 Sobic008G010400--Sobic004G125400 Sobic008G010400--Sobic005G011100 Sobic008G010400--Sobic001G238600 Sobic008G010400--Sobic010G152900 Sobic008G010400--Sobic006G066500 Sobic008G010400--Sobic007G175400 Sobic008G010400--Sobic002G332300 Sobic008G010400--Sobic010G232000 Sobic003G112200--Sobic006G066500 Sobic003G112200--Sobic003G236701 Sobic003G112200--Sobic006G226200 Sobic002G164600 Sobic002G164600 Sobic003G112200--Sobic002G164600 Sobic003G112200--Sobic001G422300 Sobic003G112200--Sobic003G231500 Sobic009G241600 Sobic009G241600 Sobic003G112200--Sobic009G241600 Sobic003G112200--Sobic004G125400 Sobic003G112200--Sobic003G220000 Sobic006G226200--Sobic003G236701 Sobic006G226200--Sobic006G066500 Sobic007G223600 Sobic007G223600 Sobic006G226200--Sobic007G223600 Sobic006G226200--Sobic003G112200 Sobic006G226200--Sobic002G164600 Sobic003G296400 Sobic003G296400 Sobic006G226200--Sobic003G296400 Sobic009G048000 Sobic009G048000 Sobic006G226200--Sobic009G048000 Sobic006G226200--Sobic003G231500 Sobic002G205500 Sobic002G205500 Sobic006G226200--Sobic002G205500 Sobic003G236701--Sobic006G066500 Sobic003G236701--Sobic002G164600 Sobic003G236701--Sobic009G241600 Sobic003G236701--Sobic006G226200 Sobic003G236701--Sobic003G112200 Sobic003G236701--Sobic007G223600 Sobic008G059800 Sobic008G059800 Sobic003G236701--Sobic008G059800 Sobic003G236701--Sobic003G231500 Sobic003G236701--Sobic001G238600 Sobic007G175400--Sobic010G152900 Sobic003G040400 Sobic003G040400 Sobic007G175400--Sobic003G040400 Sobic009G116300 Sobic009G116300 Sobic007G175400--Sobic009G116300 Sobic001G332050 Sobic001G332050 Sobic007G175400--Sobic001G332050
Octagon: transcription factors


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