Gene annotation
Transcriptome id Sobic.003G236701.1,Sobic.003G236701.2
Synonym -
Functional annotation -
UniProt A0A1W0VYP5 , A0A1W0VYN3
Pfam PF00642
Panther DB PTHR12547 PTHR12547:SF59
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G66810 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os01g45730.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a038679 , Zm00025a028258
Brachypodium PNT72490 , PNT72491 , KQK04744 , KQK04743 , KQK22053
Barley HORVU3Hr1G057920.2 , HORVU3Hr1G057920.3 , HORVU3Hr1G057920.1 , HORVU3Hr1G057920.6 , HORVU3Hr1G057920.7 , HORVU3Hr1G057920.4 , HORVU3Hr1G057920.5 , HORVU4Hr1G054650.3 , HORVU4Hr1G054650.1 , HORVU4Hr1G054650.4 , HORVU4Hr1G054650.2 , HORVU1Hr1G090910.1 , HORVU1Hr1G090910.2
Wheat TraesCS4A02G117400 , TraesCS4A02G117400 , TraesCS4D02G188300 , TraesCS1B02G444400 , TraesCS1D02G421700 , TraesCS4D02G188300 , TraesCS1D02G421800 , TraesCS1A02G414400 , TraesCS3D02G220700 , TraesCS3D02G220700 , TraesCS1B02G444500 , TraesCS1B02G444500 , TraesCS4B02G187000 , TraesCS3A02G232500 , TraesCS3A02G232500 , TraesCS1A02G414300 , TraesCS3B02G261800 , TraesCS3B02G261800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G066500 expressed protein -
2 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
3 Sobic.009G241600 Expressed in older stem(PubMedID : 28649278)@zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K18753: butyrate response factor
4 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
5 Sobic.003G112200 Cupin domain containing protein, expressed -
6 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
7 Sobic.008G059800 expressed protein -
8 Sobic.003G231500 pectinesterase, putative, expressed K01051: pectinesterase
9 Sobic.001G238600 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.001G422300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
11 Sobic.001G468300 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
12 Sobic.006G209300 transferase family domain containing protein, expressed -
13 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
14 Sobic.009G048000 villin, putative, expressed K08017: advillin
15 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
16 Sobic.002G332300 expressed protein -
17 Sobic.003G220000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed -
18 Sobic.010G199700 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
19 Sobic.004G125400 isochorismatase family protein, putative, expressed -
20 Sobic.008G112200 Expressed in middle stem(PubMedID : 28649278)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic003G236701 Sobic003G236701 Sobic006G066500 Sobic006G066500 Sobic003G236701--Sobic006G066500 Sobic002G164600 Sobic002G164600 Sobic003G236701--Sobic002G164600 Sobic009G241600 Sobic009G241600 Sobic003G236701--Sobic009G241600 Sobic006G226200 Sobic006G226200 Sobic003G236701--Sobic006G226200 Sobic003G112200 Sobic003G112200 Sobic003G236701--Sobic003G112200 Sobic007G223600 Sobic007G223600 Sobic003G236701--Sobic007G223600 Sobic008G059800 Sobic008G059800 Sobic003G236701--Sobic008G059800 Sobic003G231500 Sobic003G231500 Sobic003G236701--Sobic003G231500 Sobic001G238600 Sobic001G238600 Sobic003G236701--Sobic001G238600 Sobic006G066500--Sobic003G236701 Sobic001G422300 Sobic001G422300 Sobic006G066500--Sobic001G422300 Sobic006G066500--Sobic006G226200 Sobic006G066500--Sobic003G112200 Sobic004G125400 Sobic004G125400 Sobic006G066500--Sobic004G125400 Sobic006G066500--Sobic001G238600 Sobic006G066500--Sobic003G231500 Sobic003G220000 Sobic003G220000 Sobic006G066500--Sobic003G220000 Sobic008G010400 Sobic008G010400 Sobic006G066500--Sobic008G010400 Sobic002G164600--Sobic003G236701 Sobic002G164600--Sobic007G223600 Sobic002G164600--Sobic008G059800 Sobic002G164600--Sobic006G226200 Sobic002G164600--Sobic003G112200 Sobic002G164600--Sobic006G066500 Sobic006G209300 Sobic006G209300 Sobic002G164600--Sobic006G209300 Sobic002G164600--Sobic009G241600 Sobic005G229100 Sobic005G229100 Sobic002G164600--Sobic005G229100 Sobic009G241600--Sobic003G236701 Sobic007G027200 Sobic007G027200 Sobic009G241600--Sobic007G027200 Sobic009G241600--Sobic006G066500 Sobic009G241600--Sobic008G059800 Sobic009G241600--Sobic002G164600 Sobic010G199700 Sobic010G199700 Sobic009G241600--Sobic010G199700 Sobic008G112200 Sobic008G112200 Sobic009G241600--Sobic008G112200 Sobic009G241600--Sobic003G112200 Sobic006G166800 Sobic006G166800 Sobic009G241600--Sobic006G166800 Sobic006G226200--Sobic003G236701 Sobic006G226200--Sobic006G066500 Sobic006G226200--Sobic007G223600 Sobic006G226200--Sobic003G112200 Sobic006G226200--Sobic002G164600 Sobic003G296400 Sobic003G296400 Sobic006G226200--Sobic003G296400 Sobic009G048000 Sobic009G048000 Sobic006G226200--Sobic009G048000 Sobic006G226200--Sobic003G231500 Sobic002G205500 Sobic002G205500 Sobic006G226200--Sobic002G205500 Sobic003G112200--Sobic006G066500 Sobic003G112200--Sobic003G236701 Sobic003G112200--Sobic006G226200 Sobic003G112200--Sobic002G164600 Sobic003G112200--Sobic001G422300 Sobic003G112200--Sobic003G231500 Sobic003G112200--Sobic009G241600 Sobic003G112200--Sobic004G125400 Sobic003G112200--Sobic003G220000 Sobic007G223600--Sobic002G164600 Sobic007G223600--Sobic002G205500 Sobic007G223600--Sobic006G226200 Sobic007G223600--Sobic003G236701 Sobic007G223600--Sobic003G296400 Sobic007G223600--Sobic005G229100 Sobic007G223600--Sobic006G066500 Sobic001G224300 Sobic001G224300 Sobic007G223600--Sobic001G224300 Sobic007G223600--Sobic008G059800 Sobic008G059800--Sobic002G164600 Sobic008G059800--Sobic003G236701 Sobic008G059800--Sobic009G241600 Sobic009G153800 Sobic009G153800 Sobic008G059800--Sobic009G153800 Sobic008G059800--Sobic010G199700 Sobic008G059800--Sobic007G223600 Sobic008G059800--Sobic008G112200 Sobic009G226900 Sobic009G226900 Sobic008G059800--Sobic009G226900 Sobic008G059800--Sobic006G066500 Sobic003G231500--Sobic001G238600 Sobic003G231500--Sobic003G236701 Sobic003G231500--Sobic006G066500 Sobic003G231500--Sobic001G422300 Sobic003G231500--Sobic006G226200 Sobic003G231500--Sobic003G220000 Sobic003G231500--Sobic006G209300 Sobic007G175400 Sobic007G175400 Sobic003G231500--Sobic007G175400 Sobic008G126000 Sobic008G126000 Sobic003G231500--Sobic008G126000 Sobic001G238600--Sobic003G231500 Sobic001G238600--Sobic001G422300 Sobic002G332300 Sobic002G332300 Sobic001G238600--Sobic002G332300 Sobic001G238600--Sobic007G175400 Sobic001G238600--Sobic003G220000 Sobic001G238600--Sobic006G066500 Sobic010G232000 Sobic010G232000 Sobic001G238600--Sobic010G232000 Sobic001G238600--Sobic008G010400 Sobic005G011100 Sobic005G011100 Sobic001G238600--Sobic005G011100
Octagon: transcription factors


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