Gene annotation
Transcriptome id Sobic.009G241600.1
Synonym Sb09g029330
Functional annotation Expressed in older stem (PubMedID : 28649278)
zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5YW31
Pfam PF00642
Panther DB PTHR12547 PTHR12547:SF60
NCBI CDD -
KEGG Orthology K18753; butyrate response factor
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G66810 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os05g50080.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a038679 , Zm00025a028258 , Zm00025a037052 , Zm00025a044672
Brachypodium PNT72490 , PNT72491 , KQK04743 , KQK22053 , KQK04744
Barley HORVU3Hr1G057920.2 , HORVU3Hr1G057920.1 , HORVU3Hr1G057920.6 , HORVU3Hr1G057920.7 , HORVU3Hr1G057920.4 , HORVU3Hr1G057920.5 , HORVU4Hr1G054650.1 , HORVU2Hr1G083670.1 , HORVU4Hr1G054650.4 , HORVU4Hr1G054650.2 , HORVU4Hr1G054650.3 , HORVU1Hr1G090910.1 , HORVU1Hr1G090910.2
Wheat TraesCS4A02G117400 , TraesCS4A02G117400 , TraesCS4D02G188300 , TraesCS1B02G444400 , TraesCS1D02G421700 , TraesCS4D02G188300 , TraesCS1D02G421800 , TraesCS1A02G414400 , TraesCS3D02G220700 , TraesCS3D02G220700 , TraesCS1B02G444500 , TraesCS1B02G444500 , TraesCS3A02G232500 , TraesCS4B02G187000 , TraesCS3A02G232500 , TraesCS1A02G414300 , TraesCS3B02G261800 , TraesCS3B02G261800
Populus -


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cDNA sequences
Sobic.009G241600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G236701 - -
2 Sobic.007G027200 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
3 Sobic.006G066500 expressed protein -
4 Sobic.008G059800 expressed protein -
5 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
6 Sobic.010G199700 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
7 Sobic.008G112200 Expressed in middle stem(PubMedID : 28649278)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.003G112200 Cupin domain containing protein, expressed -
9 Sobic.006G166800 plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.002G394700 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.001G510200 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
12 Sobic.001G422300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
13 Sobic.002G332300 expressed protein -
14 Sobic.001G238600 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.003G231500 pectinesterase, putative, expressed K01051: pectinesterase
16 Sobic.008G126000 calmodulin binding protein, putative, expressed -
17 Sobic.003G352800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Protein L-ascorbate oxidase precursor (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
18 Sobic.001G468300 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
19 Sobic.006G125600 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
20 Sobic.010G108200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase


Gene co-expression network
sample Sobic009G241600 Sobic009G241600 Sobic003G236701 Sobic003G236701 Sobic009G241600--Sobic003G236701 Sobic007G027200 Sobic007G027200 Sobic009G241600--Sobic007G027200 Sobic006G066500 Sobic006G066500 Sobic009G241600--Sobic006G066500 Sobic008G059800 Sobic008G059800 Sobic009G241600--Sobic008G059800 Sobic002G164600 Sobic002G164600 Sobic009G241600--Sobic002G164600 Sobic010G199700 Sobic010G199700 Sobic009G241600--Sobic010G199700 Sobic008G112200 Sobic008G112200 Sobic009G241600--Sobic008G112200 Sobic003G112200 Sobic003G112200 Sobic009G241600--Sobic003G112200 Sobic006G166800 Sobic006G166800 Sobic009G241600--Sobic006G166800 Sobic003G236701--Sobic006G066500 Sobic003G236701--Sobic002G164600 Sobic003G236701--Sobic009G241600 Sobic006G226200 Sobic006G226200 Sobic003G236701--Sobic006G226200 Sobic003G236701--Sobic003G112200 Sobic007G223600 Sobic007G223600 Sobic003G236701--Sobic007G223600 Sobic003G236701--Sobic008G059800 Sobic003G231500 Sobic003G231500 Sobic003G236701--Sobic003G231500 Sobic001G238600 Sobic001G238600 Sobic003G236701--Sobic001G238600 Sobic007G027200--Sobic006G166800 Sobic001G510200 Sobic001G510200 Sobic007G027200--Sobic001G510200 Sobic007G027200--Sobic009G241600 Sobic002G394700 Sobic002G394700 Sobic007G027200--Sobic002G394700 Sobic003G153400 Sobic003G153400 Sobic007G027200--Sobic003G153400 Sobic007G027200--Sobic010G199700 Sobic003G352800 Sobic003G352800 Sobic007G027200--Sobic003G352800 Sobic009G162800 Sobic009G162800 Sobic007G027200--Sobic009G162800 Sobic007G043800 Sobic007G043800 Sobic007G027200--Sobic007G043800 Sobic006G066500--Sobic003G236701 Sobic001G422300 Sobic001G422300 Sobic006G066500--Sobic001G422300 Sobic006G066500--Sobic006G226200 Sobic006G066500--Sobic003G112200 Sobic004G125400 Sobic004G125400 Sobic006G066500--Sobic004G125400 Sobic006G066500--Sobic001G238600 Sobic006G066500--Sobic003G231500 Sobic003G220000 Sobic003G220000 Sobic006G066500--Sobic003G220000 Sobic008G010400 Sobic008G010400 Sobic006G066500--Sobic008G010400 Sobic008G059800--Sobic002G164600 Sobic008G059800--Sobic003G236701 Sobic008G059800--Sobic009G241600 Sobic009G153800 Sobic009G153800 Sobic008G059800--Sobic009G153800 Sobic008G059800--Sobic010G199700 Sobic008G059800--Sobic007G223600 Sobic008G059800--Sobic008G112200 Sobic009G226900 Sobic009G226900 Sobic008G059800--Sobic009G226900 Sobic008G059800--Sobic006G066500 Sobic002G164600--Sobic003G236701 Sobic002G164600--Sobic007G223600 Sobic002G164600--Sobic008G059800 Sobic002G164600--Sobic006G226200 Sobic002G164600--Sobic003G112200 Sobic002G164600--Sobic006G066500 Sobic006G209300 Sobic006G209300 Sobic002G164600--Sobic006G209300 Sobic002G164600--Sobic009G241600 Sobic005G229100 Sobic005G229100 Sobic002G164600--Sobic005G229100 Sobic010G199700--Sobic009G241600 Sobic010G199700--Sobic008G112200 Sobic010G199700--Sobic007G027200 Sobic010G199700--Sobic008G059800 Sobic010G199700--Sobic003G153400 Sobic001G468300 Sobic001G468300 Sobic010G199700--Sobic001G468300 Sobic010G199700--Sobic003G236701 Sobic010G199700--Sobic006G166800 Sobic010G199700--Sobic009G153800 Sobic008G112200--Sobic010G199700 Sobic008G112200--Sobic009G241600 Sobic008G112200--Sobic008G059800 Sobic001G066900 Sobic001G066900 Sobic008G112200--Sobic001G066900 Sobic008G112200--Sobic003G236701 Sobic008G112200--Sobic009G153800 Sobic008G112200--Sobic001G468300 Sobic008G112200--Sobic002G164600 Sobic008G112200--Sobic009G226900 Sobic003G112200--Sobic006G066500 Sobic003G112200--Sobic003G236701 Sobic003G112200--Sobic006G226200 Sobic003G112200--Sobic002G164600 Sobic003G112200--Sobic001G422300 Sobic003G112200--Sobic003G231500 Sobic003G112200--Sobic009G241600 Sobic003G112200--Sobic004G125400 Sobic003G112200--Sobic003G220000 Sobic006G166800--Sobic007G027200 Sobic006G166800--Sobic009G162800 Sobic006G166800--Sobic001G510200 Sobic006G166800--Sobic003G352800 Sobic006G166800--Sobic003G153400 Sobic006G166800--Sobic002G394700 Sobic010G196400 Sobic010G196400 Sobic006G166800--Sobic010G196400 Sobic006G166800--Sobic007G043800 Sobic006G166800--Sobic009G241600
Octagon: transcription factors


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