Gene annotation
Transcriptome id Sobic.009G048000.1
Synonym VLN1, ATVLN1, Sb09g004120
Functional annotation villin, putative, expressed
UniProt C5Z0G6
Pfam PF00626
Panther DB PTHR11977 PTHR11977:SF25
NCBI CDD -
KEGG Orthology K08017; advillin
Gene Ontology GO:0003779; actin binding


Orthologs (automatic annotation)
TAIR AT2G29890 : villin-like 1
RAP-DB (Rice) LOC_Os05g06110.1 : villin, putative, expressed
MaizeGDB (Corn) Zm00025a042875
Brachypodium KQK07438 , KQK07437
Barley HORVU1Hr1G021930.2 , HORVU1Hr1G021930.3 , HORVU1Hr1G021930.1 , HORVU1Hr1G021930.5 , HORVU1Hr1G021930.8 , HORVU1Hr1G021930.9 , HORVU1Hr1G021930.15 , HORVU1Hr1G021930.16 , HORVU1Hr1G021930.17 , HORVU1Hr1G021930.18 , HORVU1Hr1G021930.19 , HORVU1Hr1G021930.4 , HORVU1Hr1G021930.27 , HORVU1Hr1G021930.20 , HORVU1Hr1G021930.29 , HORVU1Hr1G021930.28 , HORVU1Hr1G021930.30 , HORVU1Hr1G021930.31 , HORVU1Hr1G021930.34
Wheat TraesCS1B02G122300 , TraesCS1B02G122300 , TraesCS1A02G094200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
2 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
3 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
4 Sobic.003G236701 - -
5 Sobic.001G468300 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
6 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
7 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
8 Sobic.003G112200 Cupin domain containing protein, expressed -
9 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
10 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
12 Sobic.006G066500 expressed protein -
13 Sobic.001G406700 expressed protein -
14 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
15 Sobic.001G362100 nodulation protein-related, putative, expressed -
16 Sobic.001G399200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
17 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
18 Sobic.001G336700 "Involved in secondary cell wall formation. Reduced mechanical strength in culms and leaves, thinner cell walls, reduced cellulose content, increased lignin content, in the mutant. The highest gene expression level in culms. The highest expression levels in vascular bundles and in sub-epidermal regions, where developing sclerenchyma cells are located."(PubMedID : 30590744)@COBRA-like protein precursor, putative, expressed -
19 Sobic.010G199700 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
20 Sobic.005G229100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -


Gene co-expression network
sample Sobic009G048000 Sobic009G048000 Sobic006G226200 Sobic006G226200 Sobic009G048000--Sobic006G226200 Sobic003G296400 Sobic003G296400 Sobic009G048000--Sobic003G296400 Sobic002G205500 Sobic002G205500 Sobic009G048000--Sobic002G205500 Sobic003G236701 Sobic003G236701 Sobic009G048000--Sobic003G236701 Sobic001G468300 Sobic001G468300 Sobic009G048000--Sobic001G468300 Sobic009G226900 Sobic009G226900 Sobic009G048000--Sobic009G226900 Sobic001G224300 Sobic001G224300 Sobic009G048000--Sobic001G224300 Sobic003G112200 Sobic003G112200 Sobic009G048000--Sobic003G112200 Sobic007G223600 Sobic007G223600 Sobic009G048000--Sobic007G223600 Sobic006G226200--Sobic003G236701 Sobic006G066500 Sobic006G066500 Sobic006G226200--Sobic006G066500 Sobic006G226200--Sobic007G223600 Sobic006G226200--Sobic003G112200 Sobic002G164600 Sobic002G164600 Sobic006G226200--Sobic002G164600 Sobic006G226200--Sobic003G296400 Sobic006G226200--Sobic009G048000 Sobic003G231500 Sobic003G231500 Sobic006G226200--Sobic003G231500 Sobic006G226200--Sobic002G205500 Sobic003G296400--Sobic002G205500 Sobic003G296400--Sobic001G224300 Sobic006G036400 Sobic006G036400 Sobic003G296400--Sobic006G036400 Sobic003G296400--Sobic007G223600 Sobic003G296400--Sobic006G226200 Sobic003G296400--Sobic009G226900 Sobic003G296400--Sobic009G048000 Sobic004G221300 Sobic004G221300 Sobic003G296400--Sobic004G221300 Sobic003G296400--Sobic003G236701 Sobic002G205500--Sobic003G296400 Sobic002G205500--Sobic001G224300 Sobic002G205500--Sobic007G223600 Sobic002G205500--Sobic006G226200 Sobic005G229100 Sobic005G229100 Sobic002G205500--Sobic005G229100 Sobic003G387500 Sobic003G387500 Sobic002G205500--Sobic003G387500 Sobic002G205500--Sobic009G048000 Sobic002G205500--Sobic006G036400 Sobic002G205500--Sobic009G226900 Sobic003G236701--Sobic006G066500 Sobic003G236701--Sobic002G164600 Sobic009G241600 Sobic009G241600 Sobic003G236701--Sobic009G241600 Sobic003G236701--Sobic006G226200 Sobic003G236701--Sobic003G112200 Sobic003G236701--Sobic007G223600 Sobic008G059800 Sobic008G059800 Sobic003G236701--Sobic008G059800 Sobic003G236701--Sobic003G231500 Sobic001G238600 Sobic001G238600 Sobic003G236701--Sobic001G238600 Sobic001G468300--Sobic003G236701 Sobic001G468300--Sobic009G048000 Sobic001G468300--Sobic006G066500 Sobic010G199700 Sobic010G199700 Sobic001G468300--Sobic010G199700 Sobic001G468300--Sobic009G241600 Sobic002G332300 Sobic002G332300 Sobic001G468300--Sobic002G332300 Sobic001G468300--Sobic003G112200 Sobic001G468300--Sobic006G226200 Sobic001G468300--Sobic008G059800 Sobic003G062000 Sobic003G062000 Sobic009G226900--Sobic003G062000 Sobic009G226900--Sobic001G224300 Sobic009G226900--Sobic003G296400 Sobic009G226900--Sobic002G205500 Sobic009G226900--Sobic003G387500 Sobic009G226900--Sobic006G036400 Sobic001G406700 Sobic001G406700 Sobic009G226900--Sobic001G406700 Sobic005G087200 Sobic005G087200 Sobic009G226900--Sobic005G087200 Sobic006G075000 Sobic006G075000 Sobic009G226900--Sobic006G075000 Sobic001G224300--Sobic003G296400 Sobic001G224300--Sobic002G205500 Sobic001G224300--Sobic006G036400 Sobic001G224300--Sobic003G387500 Sobic001G224300--Sobic009G226900 Sobic001G224300--Sobic007G223600 Sobic009G034300 Sobic009G034300 Sobic001G224300--Sobic009G034300 Sobic001G224300--Sobic004G221300 Sobic001G409100 Sobic001G409100 Sobic001G224300--Sobic001G409100 Sobic003G112200--Sobic006G066500 Sobic003G112200--Sobic003G236701 Sobic003G112200--Sobic006G226200 Sobic003G112200--Sobic002G164600 Sobic001G422300 Sobic001G422300 Sobic003G112200--Sobic001G422300 Sobic003G112200--Sobic003G231500 Sobic003G112200--Sobic009G241600 Sobic004G125400 Sobic004G125400 Sobic003G112200--Sobic004G125400 Sobic003G220000 Sobic003G220000 Sobic003G112200--Sobic003G220000 Sobic007G223600--Sobic002G164600 Sobic007G223600--Sobic002G205500 Sobic007G223600--Sobic006G226200 Sobic007G223600--Sobic003G236701 Sobic007G223600--Sobic003G296400 Sobic007G223600--Sobic005G229100 Sobic007G223600--Sobic006G066500 Sobic007G223600--Sobic001G224300 Sobic007G223600--Sobic008G059800
Octagon: transcription factors


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