Gene annotation
Transcriptome id Sobic.001G224300.1
Synonym CesA4, IRX5, NWS2, CESA4, Sb01g019720
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
- (PubMedID : 28944535)
CESA7 - cellulose synthase, expressed
UniProt C5WZC2
Pfam PF13632 PF14569
Panther DB PTHR13301 PTHR13301:SF63
NCBI CDD -
KEGG Orthology K10999; cellulose synthase A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G44030 : cellulose synthase A4
RAP-DB (Rice) LOC_Os10g32980.1 : CESA7 - cellulose synthase, expressed
MaizeGDB (Corn) Zm00025a045374 , Zm00025a045530 , Zm00025a054306 , Zm00025a006680 , Zm00025a013935 , Zm00025a013618 , Zm00025a047054
Brachypodium KQK20392 , PNT64610 , KQJ97023 , KQJ95295 , KQJ96300
Barley HORVU1Hr1G039250.10 , HORVU1Hr1G039250.11 , HORVU1Hr1G039250.12 , HORVU1Hr1G039250.13 , HORVU1Hr1G039250.14 , HORVU1Hr1G039250.15 , HORVU1Hr1G039250.16 , HORVU1Hr1G039250.17 , HORVU1Hr1G039250.18 , HORVU1Hr1G039250.19 , HORVU5Hr1G064230.8 , HORVU5Hr1G064230.9 , HORVU5Hr1G064230.2 , HORVU5Hr1G064230.3 , HORVU5Hr1G064230.1 , HORVU5Hr1G064230.6 , HORVU5Hr1G064230.7 , HORVU5Hr1G064230.4 , HORVU5Hr1G064230.5 , HORVU1Hr1G039250.2 , HORVU1Hr1G039250.3 , HORVU1Hr1G039250.1 , HORVU1Hr1G039250.6 , HORVU1Hr1G039250.7 , HORVU1Hr1G039250.4 , HORVU1Hr1G039250.5 , HORVU1Hr1G039250.8 , HORVU1Hr1G039250.9 , HORVU0Hr1G011610.1 , HORVU5Hr1G064230.18 , HORVU5Hr1G064230.19 , HORVU5Hr1G064230.10 , HORVU5Hr1G064230.11 , HORVU5Hr1G064230.12 , HORVU5Hr1G064230.13 , HORVU5Hr1G064230.14 , HORVU5Hr1G064230.15 , HORVU5Hr1G064230.16 , HORVU5Hr1G064230.17 , HORVU2Hr1G021410.1 , HORVU1Hr1G039250.25 , HORVU1Hr1G039250.24 , HORVU1Hr1G039250.27 , HORVU1Hr1G039250.26 , HORVU1Hr1G039250.21 , HORVU1Hr1G039250.20 , HORVU1Hr1G039250.23 , HORVU1Hr1G039250.22 , HORVU1Hr1G039250.29 , HORVU1Hr1G039250.28 , HORVU5Hr1G023640.6 , HORVU5Hr1G023640.7 , HORVU5Hr1G023640.4 , HORVU5Hr1G023640.5 , HORVU5Hr1G023640.2 , HORVU5Hr1G023640.3 , HORVU5Hr1G023640.1 , HORVU5Hr1G023640.8 , HORVU5Hr1G023640.9 , HORVU5Hr1G064230.21 , HORVU5Hr1G064230.20 , HORVU5Hr1G064230.22 , HORVU1Hr1G039250.30 , HORVU1Hr1G039250.31 , HORVU5Hr1G113750.2 , HORVU5Hr1G113750.3
Wheat TraesCS2A02G122600 , TraesCS2D02G126100 , TraesCS5D02G102600 , TraesCS5B02G495200 , TraesCS1B02G136200 , TraesCS1B02G136200 , TraesCS7A02G298600 , TraesCS6B02G104600 , TraesCS5B02G221600 , TraesCS5B02G221600 , TraesCS5B02G221600 , TraesCS5B02G221600 , TraesCS5A02G482200 , TraesCS1D02G117400 , TraesCS1A02G149300 , TraesCSU02G142500 , TraesCS1B02G167200 , TraesCS5A02G090500 , TraesCS6A02G077800 , TraesCS6A02G077800 , TraesCS5D02G495800 , TraesCS5A02G222500 , TraesCS1D02G146600 , TraesCS1D02G146600 , TraesCS5B02G096200 , TraesCS7D02G294300 , TraesCS7B02G188400 , TraesCS7B02G188400 , TraesCS7B02G188400 , TraesCS7B02G188400 , TraesCS2B02G144900 , TraesCS1A02G116200 , TraesCS1A02G116200 , TraesCS5D02G230300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G224300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
2 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
3 Sobic.006G036400 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
5 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
6 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
7 Sobic.009G034300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
8 Sobic.004G221300 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
9 Sobic.001G409100 glycosyltransferase family 43 protein, putative, expressed -
10 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
11 Sobic.010G180100 transferase family protein, putative, expressed -
12 Sobic.003G062000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
13 Sobic.001G406700 expressed protein -
14 Sobic.006G148800 "Phenylalanine ammonia-lyase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@phenylalanine ammonia-lyase, putative, expressed K13064: phenylalanine/tyrosine ammonia-lyase
15 Sobic.001G360800 cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
16 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
17 Sobic.009G048000 villin, putative, expressed K08017: advillin
18 Sobic.005G229100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
19 Sobic.002G167600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
20 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic001G224300 Sobic001G224300 Sobic003G296400 Sobic003G296400 Sobic001G224300--Sobic003G296400 Sobic002G205500 Sobic002G205500 Sobic001G224300--Sobic002G205500 Sobic006G036400 Sobic006G036400 Sobic001G224300--Sobic006G036400 Sobic003G387500 Sobic003G387500 Sobic001G224300--Sobic003G387500 Sobic009G226900 Sobic009G226900 Sobic001G224300--Sobic009G226900 Sobic007G223600 Sobic007G223600 Sobic001G224300--Sobic007G223600 Sobic009G034300 Sobic009G034300 Sobic001G224300--Sobic009G034300 Sobic004G221300 Sobic004G221300 Sobic001G224300--Sobic004G221300 Sobic001G409100 Sobic001G409100 Sobic001G224300--Sobic001G409100 Sobic003G296400--Sobic002G205500 Sobic003G296400--Sobic001G224300 Sobic003G296400--Sobic006G036400 Sobic003G296400--Sobic007G223600 Sobic006G226200 Sobic006G226200 Sobic003G296400--Sobic006G226200 Sobic003G296400--Sobic009G226900 Sobic009G048000 Sobic009G048000 Sobic003G296400--Sobic009G048000 Sobic003G296400--Sobic004G221300 Sobic003G236701 Sobic003G236701 Sobic003G296400--Sobic003G236701 Sobic002G205500--Sobic003G296400 Sobic002G205500--Sobic001G224300 Sobic002G205500--Sobic007G223600 Sobic002G205500--Sobic006G226200 Sobic005G229100 Sobic005G229100 Sobic002G205500--Sobic005G229100 Sobic002G205500--Sobic003G387500 Sobic002G205500--Sobic009G048000 Sobic002G205500--Sobic006G036400 Sobic002G205500--Sobic009G226900 Sobic006G036400--Sobic001G224300 Sobic006G036400--Sobic003G296400 Sobic003G062000 Sobic003G062000 Sobic006G036400--Sobic003G062000 Sobic006G036400--Sobic002G205500 Sobic006G036400--Sobic001G409100 Sobic006G036400--Sobic009G034300 Sobic006G036400--Sobic009G226900 Sobic001G360800 Sobic001G360800 Sobic006G036400--Sobic001G360800 Sobic006G036400--Sobic004G221300 Sobic001G406700 Sobic001G406700 Sobic003G387500--Sobic001G406700 Sobic006G144600 Sobic006G144600 Sobic003G387500--Sobic006G144600 Sobic003G387500--Sobic001G224300 Sobic010G232500 Sobic010G232500 Sobic003G387500--Sobic010G232500 Sobic002G167600 Sobic002G167600 Sobic003G387500--Sobic002G167600 Sobic009G170500 Sobic009G170500 Sobic003G387500--Sobic009G170500 Sobic009G162700 Sobic009G162700 Sobic003G387500--Sobic009G162700 Sobic003G387500--Sobic002G205500 Sobic003G387500--Sobic009G226900 Sobic009G226900--Sobic003G062000 Sobic009G226900--Sobic001G224300 Sobic009G226900--Sobic003G296400 Sobic009G226900--Sobic002G205500 Sobic009G226900--Sobic003G387500 Sobic009G226900--Sobic006G036400 Sobic009G226900--Sobic001G406700 Sobic005G087200 Sobic005G087200 Sobic009G226900--Sobic005G087200 Sobic006G075000 Sobic006G075000 Sobic009G226900--Sobic006G075000 Sobic002G164600 Sobic002G164600 Sobic007G223600--Sobic002G164600 Sobic007G223600--Sobic002G205500 Sobic007G223600--Sobic006G226200 Sobic007G223600--Sobic003G236701 Sobic007G223600--Sobic003G296400 Sobic007G223600--Sobic005G229100 Sobic006G066500 Sobic006G066500 Sobic007G223600--Sobic006G066500 Sobic007G223600--Sobic001G224300 Sobic008G059800 Sobic008G059800 Sobic007G223600--Sobic008G059800 Sobic009G034300--Sobic001G360800 Sobic009G034300--Sobic004G221300 Sobic009G034300--Sobic001G224300 Sobic003G410800 Sobic003G410800 Sobic009G034300--Sobic003G410800 Sobic002G203900 Sobic002G203900 Sobic009G034300--Sobic002G203900 Sobic009G034300--Sobic006G036400 Sobic009G034300--Sobic002G167600 Sobic009G034300--Sobic001G409100 Sobic010G180100 Sobic010G180100 Sobic009G034300--Sobic010G180100 Sobic004G221300--Sobic001G360800 Sobic004G221300--Sobic009G034300 Sobic004G221300--Sobic001G409100 Sobic004G221300--Sobic003G410800 Sobic004G221300--Sobic003G296400 Sobic008G110200 Sobic008G110200 Sobic004G221300--Sobic008G110200 Sobic004G221300--Sobic001G224300 Sobic009G220100 Sobic009G220100 Sobic004G221300--Sobic009G220100 Sobic004G221300--Sobic006G036400 Sobic002G396400 Sobic002G396400 Sobic001G409100--Sobic002G396400 Sobic001G409100--Sobic003G410800 Sobic001G409100--Sobic004G221300 Sobic001G409100--Sobic006G036400 Sobic001G418100 Sobic001G418100 Sobic001G409100--Sobic001G418100 Sobic001G409100--Sobic001G224300 Sobic001G038300 Sobic001G038300 Sobic001G409100--Sobic001G038300 Sobic001G409100--Sobic010G180100 Sobic001G409100--Sobic009G220100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.