Gene annotation
Transcriptome id Sobic.006G148800.1
Synonym ATPAL1, Sb06g022740, PAL, PAL1
Functional annotation "Phenylalanine ammonia-lyase, the MYB transcription factor binding domain AACG element" (PubMedID : 24045932)
phenylalanine ammonia-lyase, putative, expressed
UniProt D6RVU6 , C5YCD6
Pfam PF00221
Panther DB PTHR10362 PTHR10362:SF11
NCBI CDD -
KEGG Orthology K13064; phenylalanine/tyrosine ammonia-lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37040 : PHE ammonia lyase 1
RAP-DB (Rice) LOC_Os04g43760.1 : phenylalanine ammonia-lyase, putative, expressed
MaizeGDB (Corn) Zm00025a021097 , Zm00025a021100 , Zm00025a021102 , Zm00025a021099 , Zm00025a032035 , Zm00025a032034 , Zm00025a047442 , Zm00025a032030 , Zm00025a007342 , Zm00025a010654 , Zm00025a010653
Brachypodium KQJ83619 , KQK00065 , KQK00064 , KQK00414 , KQK00415
Barley HORVU6Hr1G058820.7 , HORVU6Hr1G058820.6 , HORVU6Hr1G058820.5 , HORVU6Hr1G058820.4 , HORVU6Hr1G058820.3 , HORVU6Hr1G058820.2 , HORVU6Hr1G058820.1 , HORVU6Hr1G058820.9 , HORVU6Hr1G058820.8 , HORVU0Hr1G016330.3 , HORVU0Hr1G016330.2 , HORVU0Hr1G016330.1 , HORVU0Hr1G016330.7 , HORVU0Hr1G016330.6 , HORVU0Hr1G016330.5 , HORVU0Hr1G016330.4 , HORVU0Hr1G016330.9 , HORVU0Hr1G016330.8 , HORVU3Hr1G005330.1 , HORVU3Hr1G005330.2 , HORVU3Hr1G005330.3 , HORVU1Hr1G022060.1 , HORVU1Hr1G022060.2 , HORVU0Hr1G016330.10 , HORVU6Hr1G058820.12 , HORVU6Hr1G058820.11 , HORVU6Hr1G058820.10 , HORVU6Hr1G058840.1 , HORVU6Hr1G058840.2
Wheat TraesCS1D02G039300 , TraesCS3B02G053900 , TraesCS6A02G222900 , TraesCS2D02G377400 , TraesCS1B02G048300 , TraesCS2B02G398200 , TraesCS2D02G377600 , TraesCS4A02G401300 , TraesCS2A02G381000 , TraesCS2A02G381100 , TraesCS2B02G398400 , TraesCS2A02G380900 , TraesCS3A02G029200 , TraesCS1B02G048200 , TraesCS6D02G212200 , TraesCS6D02G212200 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS3D02G016300 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS1B02G048100 , TraesCS1B02G048100 , TraesCS6A02G222800 , TraesCS2D02G377500
Populus -


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cDNA sequences
Sobic.006G148800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G132300 cytochrome P450 51, putative, expressed K05917: sterol 14alpha-demethylase
2 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
3 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
4 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
5 Sobic.001G409100 glycosyltransferase family 43 protein, putative, expressed -
6 Sobic.004G221300 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
7 Sobic.003G112200 Cupin domain containing protein, expressed -
8 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
9 Sobic.006G066500 expressed protein -
10 Sobic.009G048000 villin, putative, expressed K08017: advillin
11 Sobic.008G110200 OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed K09377: cysteine and glycine-rich protein
12 Sobic.001G360800 cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
13 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
14 Sobic.004G125400 isochorismatase family protein, putative, expressed -
15 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
16 Sobic.010G180100 transferase family protein, putative, expressed -
17 Sobic.002G352000 expressed protein -
18 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
19 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.009G034300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic006G148800 Sobic006G148800 Sobic005G132300 Sobic005G132300 Sobic006G148800--Sobic005G132300 Sobic001G224300 Sobic001G224300 Sobic006G148800--Sobic001G224300 Sobic003G296400 Sobic003G296400 Sobic006G148800--Sobic003G296400 Sobic006G226200 Sobic006G226200 Sobic006G148800--Sobic006G226200 Sobic001G409100 Sobic001G409100 Sobic006G148800--Sobic001G409100 Sobic004G221300 Sobic004G221300 Sobic006G148800--Sobic004G221300 Sobic003G112200 Sobic003G112200 Sobic006G148800--Sobic003G112200 Sobic002G205500 Sobic002G205500 Sobic006G148800--Sobic002G205500 Sobic006G066500 Sobic006G066500 Sobic006G148800--Sobic006G066500 Sobic005G132300--Sobic006G148800 Sobic004G125400 Sobic004G125400 Sobic005G132300--Sobic004G125400 Sobic005G132300--Sobic001G224300 Sobic005G132300--Sobic003G296400 Sobic005G132300--Sobic003G112200 Sobic005G132300--Sobic006G226200 Sobic005G132300--Sobic006G066500 Sobic005G132300--Sobic004G221300 Sobic005G132300--Sobic001G409100 Sobic001G224300--Sobic003G296400 Sobic001G224300--Sobic002G205500 Sobic006G036400 Sobic006G036400 Sobic001G224300--Sobic006G036400 Sobic003G387500 Sobic003G387500 Sobic001G224300--Sobic003G387500 Sobic009G226900 Sobic009G226900 Sobic001G224300--Sobic009G226900 Sobic007G223600 Sobic007G223600 Sobic001G224300--Sobic007G223600 Sobic009G034300 Sobic009G034300 Sobic001G224300--Sobic009G034300 Sobic001G224300--Sobic004G221300 Sobic001G224300--Sobic001G409100 Sobic003G296400--Sobic002G205500 Sobic003G296400--Sobic001G224300 Sobic003G296400--Sobic006G036400 Sobic003G296400--Sobic007G223600 Sobic003G296400--Sobic006G226200 Sobic003G296400--Sobic009G226900 Sobic009G048000 Sobic009G048000 Sobic003G296400--Sobic009G048000 Sobic003G296400--Sobic004G221300 Sobic003G236701 Sobic003G236701 Sobic003G296400--Sobic003G236701 Sobic006G226200--Sobic003G236701 Sobic006G226200--Sobic006G066500 Sobic006G226200--Sobic007G223600 Sobic006G226200--Sobic003G112200 Sobic002G164600 Sobic002G164600 Sobic006G226200--Sobic002G164600 Sobic006G226200--Sobic003G296400 Sobic006G226200--Sobic009G048000 Sobic003G231500 Sobic003G231500 Sobic006G226200--Sobic003G231500 Sobic006G226200--Sobic002G205500 Sobic002G396400 Sobic002G396400 Sobic001G409100--Sobic002G396400 Sobic003G410800 Sobic003G410800 Sobic001G409100--Sobic003G410800 Sobic001G409100--Sobic004G221300 Sobic001G409100--Sobic006G036400 Sobic001G418100 Sobic001G418100 Sobic001G409100--Sobic001G418100 Sobic001G409100--Sobic001G224300 Sobic001G038300 Sobic001G038300 Sobic001G409100--Sobic001G038300 Sobic010G180100 Sobic010G180100 Sobic001G409100--Sobic010G180100 Sobic009G220100 Sobic009G220100 Sobic001G409100--Sobic009G220100 Sobic001G360800 Sobic001G360800 Sobic004G221300--Sobic001G360800 Sobic004G221300--Sobic009G034300 Sobic004G221300--Sobic001G409100 Sobic004G221300--Sobic003G410800 Sobic004G221300--Sobic003G296400 Sobic008G110200 Sobic008G110200 Sobic004G221300--Sobic008G110200 Sobic004G221300--Sobic001G224300 Sobic004G221300--Sobic009G220100 Sobic004G221300--Sobic006G036400 Sobic003G112200--Sobic006G066500 Sobic003G112200--Sobic003G236701 Sobic003G112200--Sobic006G226200 Sobic003G112200--Sobic002G164600 Sobic001G422300 Sobic001G422300 Sobic003G112200--Sobic001G422300 Sobic003G112200--Sobic003G231500 Sobic009G241600 Sobic009G241600 Sobic003G112200--Sobic009G241600 Sobic003G112200--Sobic004G125400 Sobic003G220000 Sobic003G220000 Sobic003G112200--Sobic003G220000 Sobic002G205500--Sobic003G296400 Sobic002G205500--Sobic001G224300 Sobic002G205500--Sobic007G223600 Sobic002G205500--Sobic006G226200 Sobic005G229100 Sobic005G229100 Sobic002G205500--Sobic005G229100 Sobic002G205500--Sobic003G387500 Sobic002G205500--Sobic009G048000 Sobic002G205500--Sobic006G036400 Sobic002G205500--Sobic009G226900 Sobic006G066500--Sobic003G236701 Sobic006G066500--Sobic001G422300 Sobic006G066500--Sobic006G226200 Sobic006G066500--Sobic003G112200 Sobic006G066500--Sobic004G125400 Sobic001G238600 Sobic001G238600 Sobic006G066500--Sobic001G238600 Sobic006G066500--Sobic003G231500 Sobic006G066500--Sobic003G220000 Sobic008G010400 Sobic008G010400 Sobic006G066500--Sobic008G010400
Octagon: transcription factors


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