Gene annotation
Transcriptome id Sobic.008G110200.1
Synonym Sb08g016450, WLIM1
Functional annotation OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed
UniProt C5YP52
Pfam PF00412
Panther DB PTHR24206 PTHR24206:SF29
NCBI CDD KOG1700; Regulatory protein MLP and related LIM proteins
KEGG Orthology K09377; cysteine and glycine-rich protein
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G10200 : GATA type zinc finger transcription factor family protein
RAP-DB (Rice) LOC_Os12g32620.1 : OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed
MaizeGDB (Corn) Zm00025a023112 , Zm00025a025575 , Zm00025a040650
Brachypodium PNT62651 , KQJ86588
Barley HORVU5Hr1G028180.1
Wheat TraesCS5B02G107400 , TraesCS5D02G115000 , TraesCS5A02G103100 , TraesCS5A02G103100
Populus -


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cDNA sequences
Sobic.008G110200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G221300 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
2 Sobic.001G409100 glycosyltransferase family 43 protein, putative, expressed -
3 Sobic.001G038300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
4 Sobic.010G180100 transferase family protein, putative, expressed -
5 Sobic.009G048000 villin, putative, expressed K08017: advillin
6 Sobic.006G148800 "Phenylalanine ammonia-lyase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@phenylalanine ammonia-lyase, putative, expressed K13064: phenylalanine/tyrosine ammonia-lyase
7 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
8 Sobic.008G141200 DUF1336 domain containing protein, expressed -
9 Sobic.009G016100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
10 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
11 Sobic.001G434300 expressed protein -
12 Sobic.001G360800 cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
13 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
14 Sobic.002G384000 expressed protein -
15 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
16 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
17 Sobic.005G004700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
18 Sobic.003G410800 exostosin family domain containing protein, expressed -
19 Sobic.003G122200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
20 Sobic.001G344500 sucrose synthase(PubMedID : 26616172)@sucrose synthase, putative, expressed K00695: sucrose synthase


Gene co-expression network
sample Sobic008G110200 Sobic008G110200 Sobic004G221300 Sobic004G221300 Sobic008G110200--Sobic004G221300 Sobic001G409100 Sobic001G409100 Sobic008G110200--Sobic001G409100 Sobic001G038300 Sobic001G038300 Sobic008G110200--Sobic001G038300 Sobic010G180100 Sobic010G180100 Sobic008G110200--Sobic010G180100 Sobic009G048000 Sobic009G048000 Sobic008G110200--Sobic009G048000 Sobic006G148800 Sobic006G148800 Sobic008G110200--Sobic006G148800 Sobic001G418100 Sobic001G418100 Sobic008G110200--Sobic001G418100 Sobic008G141200 Sobic008G141200 Sobic008G110200--Sobic008G141200 Sobic009G016100 Sobic009G016100 Sobic008G110200--Sobic009G016100 Sobic001G360800 Sobic001G360800 Sobic004G221300--Sobic001G360800 Sobic009G034300 Sobic009G034300 Sobic004G221300--Sobic009G034300 Sobic004G221300--Sobic001G409100 Sobic003G410800 Sobic003G410800 Sobic004G221300--Sobic003G410800 Sobic003G296400 Sobic003G296400 Sobic004G221300--Sobic003G296400 Sobic004G221300--Sobic008G110200 Sobic001G224300 Sobic001G224300 Sobic004G221300--Sobic001G224300 Sobic009G220100 Sobic009G220100 Sobic004G221300--Sobic009G220100 Sobic006G036400 Sobic006G036400 Sobic004G221300--Sobic006G036400 Sobic002G396400 Sobic002G396400 Sobic001G409100--Sobic002G396400 Sobic001G409100--Sobic003G410800 Sobic001G409100--Sobic004G221300 Sobic001G409100--Sobic006G036400 Sobic001G409100--Sobic001G418100 Sobic001G409100--Sobic001G224300 Sobic001G409100--Sobic001G038300 Sobic001G409100--Sobic010G180100 Sobic001G409100--Sobic009G220100 Sobic001G038300--Sobic002G396400 Sobic001G107100 Sobic001G107100 Sobic001G038300--Sobic001G107100 Sobic003G250700 Sobic003G250700 Sobic001G038300--Sobic003G250700 Sobic001G038300--Sobic001G418100 Sobic010G047600 Sobic010G047600 Sobic001G038300--Sobic010G047600 Sobic001G434300 Sobic001G434300 Sobic001G038300--Sobic001G434300 Sobic001G475500 Sobic001G475500 Sobic001G038300--Sobic001G475500 Sobic007G150800 Sobic007G150800 Sobic001G038300--Sobic007G150800 Sobic003G122200 Sobic003G122200 Sobic001G038300--Sobic003G122200 Sobic010G131400 Sobic010G131400 Sobic010G180100--Sobic010G131400 Sobic002G254900 Sobic002G254900 Sobic010G180100--Sobic002G254900 Sobic002G167600 Sobic002G167600 Sobic010G180100--Sobic002G167600 Sobic001G360700 Sobic001G360700 Sobic010G180100--Sobic001G360700 Sobic001G002800 Sobic001G002800 Sobic010G180100--Sobic001G002800 Sobic010G180100--Sobic001G224300 Sobic010G180100--Sobic001G409100 Sobic004G047600 Sobic004G047600 Sobic010G180100--Sobic004G047600 Sobic003G387500 Sobic003G387500 Sobic010G180100--Sobic003G387500 Sobic006G226200 Sobic006G226200 Sobic009G048000--Sobic006G226200 Sobic009G048000--Sobic003G296400 Sobic002G205500 Sobic002G205500 Sobic009G048000--Sobic002G205500 Sobic003G236701 Sobic003G236701 Sobic009G048000--Sobic003G236701 Sobic001G468300 Sobic001G468300 Sobic009G048000--Sobic001G468300 Sobic009G226900 Sobic009G226900 Sobic009G048000--Sobic009G226900 Sobic009G048000--Sobic001G224300 Sobic003G112200 Sobic003G112200 Sobic009G048000--Sobic003G112200 Sobic007G223600 Sobic007G223600 Sobic009G048000--Sobic007G223600 Sobic005G132300 Sobic005G132300 Sobic006G148800--Sobic005G132300 Sobic006G148800--Sobic001G224300 Sobic006G148800--Sobic003G296400 Sobic006G148800--Sobic006G226200 Sobic006G148800--Sobic001G409100 Sobic006G148800--Sobic004G221300 Sobic006G148800--Sobic003G112200 Sobic006G148800--Sobic002G205500 Sobic006G066500 Sobic006G066500 Sobic006G148800--Sobic006G066500 Sobic003G219800 Sobic003G219800 Sobic001G418100--Sobic003G219800 Sobic005G112800 Sobic005G112800 Sobic001G418100--Sobic005G112800 Sobic001G418100--Sobic002G396400 Sobic009G181800 Sobic009G181800 Sobic001G418100--Sobic009G181800 Sobic002G154600 Sobic002G154600 Sobic001G418100--Sobic002G154600 Sobic001G514200 Sobic001G514200 Sobic001G418100--Sobic001G514200 Sobic002G128800 Sobic002G128800 Sobic001G418100--Sobic002G128800 Sobic001G418100--Sobic001G475500 Sobic008G055100 Sobic008G055100 Sobic001G418100--Sobic008G055100 Sobic003G135400 Sobic003G135400 Sobic008G141200--Sobic003G135400 Sobic009G206500 Sobic009G206500 Sobic008G141200--Sobic009G206500 Sobic003G420100 Sobic003G420100 Sobic008G141200--Sobic003G420100 Sobic009G059500 Sobic009G059500 Sobic008G141200--Sobic009G059500 Sobic003G247600 Sobic003G247600 Sobic008G141200--Sobic003G247600 Sobic008G141200--Sobic010G131400 Sobic009G189200 Sobic009G189200 Sobic008G141200--Sobic009G189200 Sobic009G214100 Sobic009G214100 Sobic008G141200--Sobic009G214100 Sobic004G066900 Sobic004G066900 Sobic008G141200--Sobic004G066900 Sobic009G016100--Sobic008G110200 Sobic004G030300 Sobic004G030300 Sobic009G016100--Sobic004G030300 Sobic009G016100--Sobic009G048000 Sobic004G315000 Sobic004G315000 Sobic009G016100--Sobic004G315000 Sobic003G364900 Sobic003G364900 Sobic009G016100--Sobic003G364900 Sobic009G016100--Sobic004G221300 Sobic003G072900 Sobic003G072900 Sobic009G016100--Sobic003G072900 Sobic003G105500 Sobic003G105500 Sobic009G016100--Sobic003G105500 Sobic009G016100--Sobic008G141200
Octagon: transcription factors


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