Gene annotation
Transcriptome id Sobic.005G004700.1
Synonym PCK1, lateral organ boundaries, ASL5, SbLBD22, LBD12, Sb05g000550
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root, expression induced by BR treatment" (PubMedID : 20499123)
DUF260 domain containing protein, putative, expressed
UniProt C5Y2Z9
Pfam PF03195
Panther DB PTHR31301 PTHR31301:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G30130 : Lateral organ boundaries (LOB) domain family protein
RAP-DB (Rice) LOC_Os05g27980.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007545 , Zm00025a017194 , Zm00025a043472 , Zm00025a053791
Brachypodium KQK13888
Barley HORVU4Hr1G002480.1 , HORVU4Hr1G002480.2 , HORVU1Hr1G060290.4 , HORVU1Hr1G060290.1 , HORVU1Hr1G060290.2 , HORVU1Hr1G060290.3 , HORVU5Hr1G047610.2 , HORVU5Hr1G047610.1
Wheat TraesCS1B02G235700 , TraesCS4B02G016200 , TraesCS4A02G297500 , TraesCS1D02G224000 , TraesCS4D02G014600 , TraesCS1A02G222300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G233500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.003G117500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
3 Sobic.002G173200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.003G427700 expressed protein -
5 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
6 Sobic.008G110200 OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed K09377: cysteine and glycine-rich protein
7 Sobic.004G030300 expressed protein -
8 Sobic.001G481000 expressed protein -
9 Sobic.001G038300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
10 Sobic.007G213400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
11 Sobic.006G190600 heavy metal-associated domain containing protein, expressed -
12 Sobic.001G295800 expressed protein -
13 Sobic.005G142500 plant protein of unknown function domain containing protein, expressed -
14 Sobic.001G434300 expressed protein -
15 Sobic.004G170800 serine-aspartate repeat-containing protein I precursor, putative, expressed -
16 Sobic.001G245800 expressed protein -
17 Sobic.003G307400 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
18 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
19 Sobic.003G407001 - -
20 Sobic.009G021700 expressed protein -


Gene co-expression network
sample Sobic005G004700 Sobic005G004700 Sobic002G233500 Sobic002G233500 Sobic005G004700--Sobic002G233500 Sobic003G117500 Sobic003G117500 Sobic005G004700--Sobic003G117500 Sobic002G173200 Sobic002G173200 Sobic005G004700--Sobic002G173200 Sobic003G427700 Sobic003G427700 Sobic005G004700--Sobic003G427700 Sobic001G475500 Sobic001G475500 Sobic005G004700--Sobic001G475500 Sobic008G110200 Sobic008G110200 Sobic005G004700--Sobic008G110200 Sobic004G030300 Sobic004G030300 Sobic005G004700--Sobic004G030300 Sobic001G481000 Sobic001G481000 Sobic005G004700--Sobic001G481000 Sobic001G038300 Sobic001G038300 Sobic005G004700--Sobic001G038300 Sobic002G396400 Sobic002G396400 Sobic002G233500--Sobic002G396400 Sobic002G233500--Sobic001G038300 Sobic002G233500--Sobic001G475500 Sobic002G233500--Sobic005G004700 Sobic001G434300 Sobic001G434300 Sobic002G233500--Sobic001G434300 Sobic001G107100 Sobic001G107100 Sobic002G233500--Sobic001G107100 Sobic002G233500--Sobic002G173200 Sobic002G233500--Sobic003G117500 Sobic001G112100 Sobic001G112100 Sobic002G233500--Sobic001G112100 Sobic003G117500--Sobic001G475500 Sobic003G027400 Sobic003G027400 Sobic003G117500--Sobic003G027400 Sobic003G117500--Sobic001G481000 Sobic001G310300 Sobic001G310300 Sobic003G117500--Sobic001G310300 Sobic007G150800 Sobic007G150800 Sobic003G117500--Sobic007G150800 Sobic003G117500--Sobic001G434300 Sobic003G219800 Sobic003G219800 Sobic003G117500--Sobic003G219800 Sobic002G350500 Sobic002G350500 Sobic003G117500--Sobic002G350500 Sobic001G502900 Sobic001G502900 Sobic003G117500--Sobic001G502900 Sobic002G173200--Sobic005G004700 Sobic002G173200--Sobic002G233500 Sobic002G379200 Sobic002G379200 Sobic002G173200--Sobic002G379200 Sobic001G402200 Sobic001G402200 Sobic002G173200--Sobic001G402200 Sobic004G315000 Sobic004G315000 Sobic002G173200--Sobic004G315000 Sobic010G042500 Sobic010G042500 Sobic002G173200--Sobic010G042500 Sobic006G099900 Sobic006G099900 Sobic002G173200--Sobic006G099900 Sobic001G187200 Sobic001G187200 Sobic002G173200--Sobic001G187200 Sobic001G333400 Sobic001G333400 Sobic002G173200--Sobic001G333400 Sobic005G142500 Sobic005G142500 Sobic003G427700--Sobic005G142500 Sobic003G427700--Sobic005G004700 Sobic005G051600 Sobic005G051600 Sobic003G427700--Sobic005G051600 Sobic001G470100 Sobic001G470100 Sobic003G427700--Sobic001G470100 Sobic001G264300 Sobic001G264300 Sobic003G427700--Sobic001G264300 Sobic007G213400 Sobic007G213400 Sobic003G427700--Sobic007G213400 Sobic003G427700--Sobic001G038300 Sobic002G247800 Sobic002G247800 Sobic003G427700--Sobic002G247800 Sobic010G159100 Sobic010G159100 Sobic003G427700--Sobic010G159100 Sobic001G475500--Sobic001G502900 Sobic003G160700 Sobic003G160700 Sobic001G475500--Sobic003G160700 Sobic003G122200 Sobic003G122200 Sobic001G475500--Sobic003G122200 Sobic005G113300 Sobic005G113300 Sobic001G475500--Sobic005G113300 Sobic001G475500--Sobic007G150800 Sobic009G173500 Sobic009G173500 Sobic001G475500--Sobic009G173500 Sobic001G361600 Sobic001G361600 Sobic001G475500--Sobic001G361600 Sobic004G220000 Sobic004G220000 Sobic001G475500--Sobic004G220000 Sobic001G475500--Sobic003G117500 Sobic004G221300 Sobic004G221300 Sobic008G110200--Sobic004G221300 Sobic001G409100 Sobic001G409100 Sobic008G110200--Sobic001G409100 Sobic008G110200--Sobic001G038300 Sobic010G180100 Sobic010G180100 Sobic008G110200--Sobic010G180100 Sobic009G048000 Sobic009G048000 Sobic008G110200--Sobic009G048000 Sobic006G148800 Sobic006G148800 Sobic008G110200--Sobic006G148800 Sobic001G418100 Sobic001G418100 Sobic008G110200--Sobic001G418100 Sobic008G141200 Sobic008G141200 Sobic008G110200--Sobic008G141200 Sobic009G016100 Sobic009G016100 Sobic008G110200--Sobic009G016100 Sobic003G052900 Sobic003G052900 Sobic004G030300--Sobic003G052900 Sobic002G226500 Sobic002G226500 Sobic004G030300--Sobic002G226500 Sobic001G245800 Sobic001G245800 Sobic004G030300--Sobic001G245800 Sobic006G030200 Sobic006G030200 Sobic004G030300--Sobic006G030200 Sobic007G018100 Sobic007G018100 Sobic004G030300--Sobic007G018100 Sobic006G119000 Sobic006G119000 Sobic004G030300--Sobic006G119000 Sobic003G247600 Sobic003G247600 Sobic004G030300--Sobic003G247600 Sobic003G307400 Sobic003G307400 Sobic004G030300--Sobic003G307400 Sobic004G030300--Sobic001G434300 Sobic001G304100 Sobic001G304100 Sobic001G481000--Sobic001G304100 Sobic001G481000--Sobic001G310300 Sobic010G184800 Sobic010G184800 Sobic001G481000--Sobic010G184800 Sobic004G203700 Sobic004G203700 Sobic001G481000--Sobic004G203700 Sobic009G188000 Sobic009G188000 Sobic001G481000--Sobic009G188000 Sobic001G481000--Sobic003G027400 Sobic003G321200 Sobic003G321200 Sobic001G481000--Sobic003G321200 Sobic002G213600 Sobic002G213600 Sobic001G481000--Sobic002G213600 Sobic001G481000--Sobic003G160700 Sobic001G038300--Sobic002G396400 Sobic001G038300--Sobic001G107100 Sobic003G250700 Sobic003G250700 Sobic001G038300--Sobic003G250700 Sobic001G038300--Sobic001G418100 Sobic010G047600 Sobic010G047600 Sobic001G038300--Sobic010G047600 Sobic001G038300--Sobic001G434300 Sobic001G038300--Sobic001G475500 Sobic001G038300--Sobic007G150800 Sobic001G038300--Sobic003G122200
Octagon: transcription factors


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