Gene annotation
Transcriptome id Sobic.003G307400.1
Synonym Sb03g035590, CML41
Functional annotation EF hand family protein, putative, expressed
UniProt C5XKX4
Pfam PF00036 PF13833
Panther DB PTHR10891 PTHR10891:SF568
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT3G50770 : calmodulin-like 41
RAP-DB (Rice) LOC_Os01g56030.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a027434
Brachypodium KQK09914
Barley HORVU3Hr1G074300.1
Wheat TraesCS3B02G336000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G138300 DUF617 domain containing protein, expressed -
2 Sobic.001G514200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.003G121000 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.006G119000 X8 domain containing protein, expressed -
5 Sobic.008G135300 thaumatin family domain containing protein, expressed -
6 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
7 Sobic.001G522700 no apical meristem protein, putative, expressed -
8 Sobic.001G295800 expressed protein -
9 Sobic.008G102800 expressed protein -
10 Sobic.010G047600 plant protein of unknown function domain containing protein, expressed -
11 Sobic.009G109000 expressed protein -
12 Sobic.002G092600 harpin-induced protein 1 domain containing protein, expressed -
13 Sobic.003G121100 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.009G074500 expressed protein -
15 Sobic.001G261460 - -
16 Sobic.001G430100 - -
17 Sobic.002G183700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-ascorbate oxidase precursor, putative, expressed -
18 Sobic.001G310300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.001G245800 expressed protein -
20 Sobic.009G221800 reticulon domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G307400 Sobic003G307400 Sobic010G138300 Sobic010G138300 Sobic003G307400--Sobic010G138300 Sobic001G514200 Sobic001G514200 Sobic003G307400--Sobic001G514200 Sobic003G121000 Sobic003G121000 Sobic003G307400--Sobic003G121000 Sobic006G119000 Sobic006G119000 Sobic003G307400--Sobic006G119000 Sobic008G135300 Sobic008G135300 Sobic003G307400--Sobic008G135300 Sobic003G034600 Sobic003G034600 Sobic003G307400--Sobic003G034600 Sobic001G522700 Sobic001G522700 Sobic003G307400--Sobic001G522700 Sobic001G295800 Sobic001G295800 Sobic003G307400--Sobic001G295800 Sobic008G102800 Sobic008G102800 Sobic003G307400--Sobic008G102800 Sobic010G138300--Sobic001G514200 Sobic009G199001 Sobic009G199001 Sobic010G138300--Sobic009G199001 Sobic010G138300--Sobic008G102800 Sobic009G221500 Sobic009G221500 Sobic010G138300--Sobic009G221500 Sobic001G245800 Sobic001G245800 Sobic010G138300--Sobic001G245800 Sobic009G074500 Sobic009G074500 Sobic010G138300--Sobic009G074500 Sobic003G340100 Sobic003G340100 Sobic010G138300--Sobic003G340100 Sobic007G050200 Sobic007G050200 Sobic010G138300--Sobic007G050200 Sobic006G227500 Sobic006G227500 Sobic010G138300--Sobic006G227500 Sobic008G055100 Sobic008G055100 Sobic001G514200--Sobic008G055100 Sobic010G047600 Sobic010G047600 Sobic001G514200--Sobic010G047600 Sobic001G261460 Sobic001G261460 Sobic001G514200--Sobic001G261460 Sobic001G310300 Sobic001G310300 Sobic001G514200--Sobic001G310300 Sobic001G514200--Sobic010G138300 Sobic009G221800 Sobic009G221800 Sobic001G514200--Sobic009G221800 Sobic005G061200 Sobic005G061200 Sobic001G514200--Sobic005G061200 Sobic007G176000 Sobic007G176000 Sobic001G514200--Sobic007G176000 Sobic002G154600 Sobic002G154600 Sobic001G514200--Sobic002G154600 Sobic003G121000--Sobic002G154600 Sobic003G121000--Sobic001G514200 Sobic003G121000--Sobic008G135300 Sobic003G121100 Sobic003G121100 Sobic003G121000--Sobic003G121100 Sobic003G183300 Sobic003G183300 Sobic003G121000--Sobic003G183300 Sobic003G408900 Sobic003G408900 Sobic003G121000--Sobic003G408900 Sobic003G121000--Sobic010G047600 Sobic003G121000--Sobic001G261460 Sobic007G090460 Sobic007G090460 Sobic003G121000--Sobic007G090460 Sobic006G030200 Sobic006G030200 Sobic006G119000--Sobic006G030200 Sobic001G295000 Sobic001G295000 Sobic006G119000--Sobic001G295000 Sobic006G119000--Sobic003G307400 Sobic006G119000--Sobic003G121000 Sobic001G314000 Sobic001G314000 Sobic006G119000--Sobic001G314000 Sobic003G236600 Sobic003G236600 Sobic006G119000--Sobic003G236600 Sobic006G119000--Sobic001G245800 Sobic001G514300 Sobic001G514300 Sobic006G119000--Sobic001G514300 Sobic006G119000--Sobic008G135300 Sobic008G135300--Sobic003G183300 Sobic001G455100 Sobic001G455100 Sobic008G135300--Sobic001G455100 Sobic008G099100 Sobic008G099100 Sobic008G135300--Sobic008G099100 Sobic008G135300--Sobic003G121000 Sobic006G201000 Sobic006G201000 Sobic008G135300--Sobic006G201000 Sobic008G135300--Sobic001G522700 Sobic007G154200 Sobic007G154200 Sobic008G135300--Sobic007G154200 Sobic006G003100 Sobic006G003100 Sobic008G135300--Sobic006G003100 Sobic008G135300--Sobic008G102800 Sobic004G217450 Sobic004G217450 Sobic003G034600--Sobic004G217450 Sobic003G122200 Sobic003G122200 Sobic003G034600--Sobic003G122200 Sobic001G475500 Sobic001G475500 Sobic003G034600--Sobic001G475500 Sobic003G034600--Sobic003G307400 Sobic006G191800 Sobic006G191800 Sobic003G034600--Sobic006G191800 Sobic006G200000 Sobic006G200000 Sobic003G034600--Sobic006G200000 Sobic003G160700 Sobic003G160700 Sobic003G034600--Sobic003G160700 Sobic009G173500 Sobic009G173500 Sobic003G034600--Sobic009G173500 Sobic007G150800 Sobic007G150800 Sobic003G034600--Sobic007G150800 Sobic001G522700--Sobic001G455100 Sobic001G522700--Sobic008G135300 Sobic001G522700--Sobic009G221500 Sobic001G522700--Sobic007G154200 Sobic010G152400 Sobic010G152400 Sobic001G522700--Sobic010G152400 Sobic001G522700--Sobic010G138300 Sobic008G019800 Sobic008G019800 Sobic001G522700--Sobic008G019800 Sobic010G148800 Sobic010G148800 Sobic001G522700--Sobic010G148800 Sobic001G522700--Sobic006G201000 Sobic005G043000 Sobic005G043000 Sobic001G295800--Sobic005G043000 Sobic001G295800--Sobic001G514200 Sobic001G481000 Sobic001G481000 Sobic001G295800--Sobic001G481000 Sobic001G295800--Sobic003G307400 Sobic001G295800--Sobic001G310300 Sobic001G295800--Sobic009G221800 Sobic009G130300 Sobic009G130300 Sobic001G295800--Sobic009G130300 Sobic003G052900 Sobic003G052900 Sobic001G295800--Sobic003G052900 Sobic009G248100 Sobic009G248100 Sobic001G295800--Sobic009G248100 Sobic006G256900 Sobic006G256900 Sobic008G102800--Sobic006G256900 Sobic008G102800--Sobic003G236600 Sobic002G001700 Sobic002G001700 Sobic008G102800--Sobic002G001700 Sobic001G430100 Sobic001G430100 Sobic008G102800--Sobic001G430100 Sobic008G102800--Sobic009G221500 Sobic006G197100 Sobic006G197100 Sobic008G102800--Sobic006G197100 Sobic008G102800--Sobic010G138300 Sobic008G102800--Sobic009G199001 Sobic001G264000 Sobic001G264000 Sobic008G102800--Sobic001G264000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.