Gene annotation
Transcriptome id Sobic.002G233500.1
Synonym UCC1, Sb02g027260
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
plastocyanin-like domain containing protein, putative, expressed
UniProt C5X320
Pfam PF02298
Panther DB PTHR33021 PTHR33021:SF65
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT2G32300 : uclacyanin 1
RAP-DB (Rice) LOC_Os09g29390.1 : plastocyanin-like domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a047336
Brachypodium KQJ90590
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G233500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
2 Sobic.001G038300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
3 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
4 Sobic.005G004700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
5 Sobic.001G434300 expressed protein -
6 Sobic.001G107100 "SRS5(Ortholog in rice:Segami, 2012)"(PubMedID : 31659833)@tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
7 Sobic.002G173200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.003G117500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
9 Sobic.001G112100 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
10 Sobic.004G221300 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
11 Sobic.001G310300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
13 Sobic.001G481000 expressed protein -
14 Sobic.010G238800 glycosyltransferase family 43 protein, putative, expressed -
15 Sobic.009G220100 exostosin family domain containing protein, expressed -
16 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
17 Sobic.003G410800 exostosin family domain containing protein, expressed -
18 Sobic.004G050600 P21-Rho-binding domain containing protein, putative, expressed -
19 Sobic.001G425300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G220000 kinase, pfkB family, putative, expressed K00856: E2.7.1.20, adenosine kinase


Gene co-expression network
sample Sobic002G233500 Sobic002G233500 Sobic002G396400 Sobic002G396400 Sobic002G233500--Sobic002G396400 Sobic001G038300 Sobic001G038300 Sobic002G233500--Sobic001G038300 Sobic001G475500 Sobic001G475500 Sobic002G233500--Sobic001G475500 Sobic005G004700 Sobic005G004700 Sobic002G233500--Sobic005G004700 Sobic001G434300 Sobic001G434300 Sobic002G233500--Sobic001G434300 Sobic001G107100 Sobic001G107100 Sobic002G233500--Sobic001G107100 Sobic002G173200 Sobic002G173200 Sobic002G233500--Sobic002G173200 Sobic003G117500 Sobic003G117500 Sobic002G233500--Sobic003G117500 Sobic001G112100 Sobic001G112100 Sobic002G233500--Sobic001G112100 Sobic001G418100 Sobic001G418100 Sobic002G396400--Sobic001G418100 Sobic002G396400--Sobic001G038300 Sobic002G396400--Sobic001G475500 Sobic001G409100 Sobic001G409100 Sobic002G396400--Sobic001G409100 Sobic002G128800 Sobic002G128800 Sobic002G396400--Sobic002G128800 Sobic009G232100 Sobic009G232100 Sobic002G396400--Sobic009G232100 Sobic002G154600 Sobic002G154600 Sobic002G396400--Sobic002G154600 Sobic009G181800 Sobic009G181800 Sobic002G396400--Sobic009G181800 Sobic009G088900 Sobic009G088900 Sobic002G396400--Sobic009G088900 Sobic001G038300--Sobic002G396400 Sobic001G038300--Sobic001G107100 Sobic003G250700 Sobic003G250700 Sobic001G038300--Sobic003G250700 Sobic001G038300--Sobic001G418100 Sobic010G047600 Sobic010G047600 Sobic001G038300--Sobic010G047600 Sobic001G038300--Sobic001G434300 Sobic001G038300--Sobic001G475500 Sobic007G150800 Sobic007G150800 Sobic001G038300--Sobic007G150800 Sobic003G122200 Sobic003G122200 Sobic001G038300--Sobic003G122200 Sobic001G502900 Sobic001G502900 Sobic001G475500--Sobic001G502900 Sobic003G160700 Sobic003G160700 Sobic001G475500--Sobic003G160700 Sobic001G475500--Sobic003G122200 Sobic005G113300 Sobic005G113300 Sobic001G475500--Sobic005G113300 Sobic001G475500--Sobic007G150800 Sobic009G173500 Sobic009G173500 Sobic001G475500--Sobic009G173500 Sobic001G361600 Sobic001G361600 Sobic001G475500--Sobic001G361600 Sobic004G220000 Sobic004G220000 Sobic001G475500--Sobic004G220000 Sobic001G475500--Sobic003G117500 Sobic005G004700--Sobic002G233500 Sobic005G004700--Sobic003G117500 Sobic005G004700--Sobic002G173200 Sobic003G427700 Sobic003G427700 Sobic005G004700--Sobic003G427700 Sobic005G004700--Sobic001G475500 Sobic008G110200 Sobic008G110200 Sobic005G004700--Sobic008G110200 Sobic004G030300 Sobic004G030300 Sobic005G004700--Sobic004G030300 Sobic001G481000 Sobic001G481000 Sobic005G004700--Sobic001G481000 Sobic005G004700--Sobic001G038300 Sobic001G434300--Sobic002G154600 Sobic007G218800 Sobic007G218800 Sobic001G434300--Sobic007G218800 Sobic003G219800 Sobic003G219800 Sobic001G434300--Sobic003G219800 Sobic001G434300--Sobic001G038300 Sobic003G316000 Sobic003G316000 Sobic001G434300--Sobic003G316000 Sobic001G310300 Sobic001G310300 Sobic001G434300--Sobic001G310300 Sobic005G061200 Sobic005G061200 Sobic001G434300--Sobic005G061200 Sobic001G434300--Sobic009G181800 Sobic001G434300--Sobic001G418100 Sobic001G107100--Sobic001G038300 Sobic001G107100--Sobic003G250700 Sobic001G107100--Sobic002G396400 Sobic001G107200 Sobic001G107200 Sobic001G107100--Sobic001G107200 Sobic002G333800 Sobic002G333800 Sobic001G107100--Sobic002G333800 Sobic002G252000 Sobic002G252000 Sobic001G107100--Sobic002G252000 Sobic006G278100 Sobic006G278100 Sobic001G107100--Sobic006G278100 Sobic001G156500 Sobic001G156500 Sobic001G107100--Sobic001G156500 Sobic007G090436 Sobic007G090436 Sobic001G107100--Sobic007G090436 Sobic002G173200--Sobic005G004700 Sobic002G173200--Sobic002G233500 Sobic002G379200 Sobic002G379200 Sobic002G173200--Sobic002G379200 Sobic001G402200 Sobic001G402200 Sobic002G173200--Sobic001G402200 Sobic004G315000 Sobic004G315000 Sobic002G173200--Sobic004G315000 Sobic010G042500 Sobic010G042500 Sobic002G173200--Sobic010G042500 Sobic006G099900 Sobic006G099900 Sobic002G173200--Sobic006G099900 Sobic001G187200 Sobic001G187200 Sobic002G173200--Sobic001G187200 Sobic001G333400 Sobic001G333400 Sobic002G173200--Sobic001G333400 Sobic003G117500--Sobic001G475500 Sobic003G027400 Sobic003G027400 Sobic003G117500--Sobic003G027400 Sobic003G117500--Sobic001G481000 Sobic003G117500--Sobic001G310300 Sobic003G117500--Sobic007G150800 Sobic003G117500--Sobic001G434300 Sobic003G117500--Sobic003G219800 Sobic002G350500 Sobic002G350500 Sobic003G117500--Sobic002G350500 Sobic003G117500--Sobic001G502900 Sobic009G188000 Sobic009G188000 Sobic001G112100--Sobic009G188000 Sobic004G295100 Sobic004G295100 Sobic001G112100--Sobic004G295100 Sobic001G304100 Sobic001G304100 Sobic001G112100--Sobic001G304100 Sobic008G009400 Sobic008G009400 Sobic001G112100--Sobic008G009400 Sobic006G172550 Sobic006G172550 Sobic001G112100--Sobic006G172550 Sobic004G297900 Sobic004G297900 Sobic001G112100--Sobic004G297900 Sobic003G299300 Sobic003G299300 Sobic001G112100--Sobic003G299300 Sobic004G292900 Sobic004G292900 Sobic001G112100--Sobic004G292900 Sobic006G235200 Sobic006G235200 Sobic001G112100--Sobic006G235200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.