Gene annotation
Transcriptome id Sobic.001G107100.3,Sobic.001G107100.2,Sobic.001G107100.1
Synonym TUA6, Sb01g009560
Functional annotation "SRS5(Ortholog in rice:Segami, 2012)" (PubMedID : 31659833)
tubulin/FtsZ domain containing protein, putative, expressed
UniProt A0A1B6QIC5 , A0A1B6QIB9 , A0A1B6QID2
Pfam PF03953 PF00091 PF00091 PF03953
Panther DB PTHR11588 PTHR11588:SF101
NCBI CDD KOG1376; Alpha tubulin
KEGG Orthology K07374; tubulin alpha
Gene Ontology GO:0003924; GTPase activity GO:0007017microtubule-based process GO:0005874microtubule


Orthologs (automatic annotation)
TAIR AT4G14960 : tubulin alpha-2 chain,Tubulin/FtsZ family protein
RAP-DB (Rice) LOC_Os03g51600.1,LOC_Os11g14220.1 : tubulin/FtsZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016899 , Zm00025a007962 , Zm00025a048479 , Zm00025a016682
Brachypodium KQK13442 , KQK12974 , KQK22854
Barley HORVU1Hr1G081280.10 , HORVU5Hr1G098960.5 , HORVU5Hr1G098960.4 , HORVU5Hr1G098960.7 , HORVU5Hr1G098960.6 , HORVU1Hr1G081280.6 , HORVU1Hr1G081280.7 , HORVU5Hr1G098960.3 , HORVU5Hr1G098960.2 , HORVU1Hr1G081280.8 , HORVU1Hr1G081280.9 , HORVU5Hr1G098960.9 , HORVU5Hr1G098960.8 , HORVU2Hr1G037570.4 , HORVU2Hr1G037570.5 , HORVU2Hr1G037570.2 , HORVU2Hr1G037570.3 , HORVU2Hr1G037570.1 , HORVU2Hr1G037550.1 , HORVU2Hr1G037550.2 , HORVU4Hr1G009520.6 , HORVU4Hr1G009520.7 , HORVU4Hr1G009520.4 , HORVU4Hr1G009520.5 , HORVU4Hr1G009520.2 , HORVU4Hr1G009520.3 , HORVU4Hr1G009520.1 , HORVU5Hr1G098960.11 , HORVU5Hr1G098960.10 , HORVU5Hr1G098960.13 , HORVU5Hr1G098960.12 , HORVU2Hr1G037560.1 , HORVU2Hr1G037560.2 , HORVU1Hr1G081280.2 , HORVU1Hr1G081280.3 , HORVU1Hr1G081280.1 , HORVU5Hr1G098960.1 , HORVU1Hr1G081280.4 , HORVU1Hr1G081280.5
Wheat TraesCS4D02G057000 , TraesCS4A02G065700 , TraesCS4A02G257800 , TraesCS1B02G364500 , TraesCS2A02G185500 , TraesCS2A02G185500 , TraesCS1D02G353100 , TraesCS1D02G353100 , TraesCS1D02G353100 , TraesCS1D02G353100 , TraesCS1D02G353100 , TraesCS4B02G056700 , TraesCS4B02G056700 , TraesCS4B02G243100 , TraesCS4D02G242700 , TraesCS5A02G407800 , TraesCS1B02G364500 , TraesCS1B02G364500 , TraesCS1B02G364500 , TraesCS2D02G202200 , TraesCS5D02G417700 , TraesCS2B02G221800 , TraesCS2B02G221800 , TraesCS5B02G412700 , TraesCS1A02G350200 , TraesCS1A02G350200 , TraesCS1A02G350200 , TraesCS1A02G350200
Populus PNT49138 , PNT49137 , PNT57258


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cDNA sequences
Sobic.001G107100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G038300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
2 Sobic.003G250700 fasciclin domain containing protein, expressed -
3 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
4 Sobic.001G107200 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
5 Sobic.002G333800 CSLF8 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed K00770: 1,4-beta-D-xylan synthase
6 Sobic.002G252000 CHIT13 - Chitinase family protein precursor, expressed -
7 Sobic.006G278100 expressed protein -
8 Sobic.001G156500 AGC_PVPK_like_kin82y.9 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
9 Sobic.007G090436 - K08235: xyloglucan:xyloglucosyl transferase
10 Sobic.010G014400 - -
11 Sobic.002G338400 uncharacterized secreted protein, putative, expressed -
12 Sobic.007G150800 expressed protein -
13 Sobic.002G128800 fiber protein Fb34, putative, expressed -
14 Sobic.003G000200 AWPM-19-like membrane family protein, putative, expressed -
15 Sobic.001G444800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
16 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
17 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
18 Sobic.002G350400 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
19 Sobic.010G047600 plant protein of unknown function domain containing protein, expressed -
20 Sobic.005G112800 erythronate-4-phosphate dehydrogenase, putative, expressed K01251: E3.3.1.1, adenosylhomocysteinase


Gene co-expression network
sample Sobic001G107100 Sobic001G107100 Sobic001G038300 Sobic001G038300 Sobic001G107100--Sobic001G038300 Sobic003G250700 Sobic003G250700 Sobic001G107100--Sobic003G250700 Sobic002G396400 Sobic002G396400 Sobic001G107100--Sobic002G396400 Sobic001G107200 Sobic001G107200 Sobic001G107100--Sobic001G107200 Sobic002G333800 Sobic002G333800 Sobic001G107100--Sobic002G333800 Sobic002G252000 Sobic002G252000 Sobic001G107100--Sobic002G252000 Sobic006G278100 Sobic006G278100 Sobic001G107100--Sobic006G278100 Sobic001G156500 Sobic001G156500 Sobic001G107100--Sobic001G156500 Sobic007G090436 Sobic007G090436 Sobic001G107100--Sobic007G090436 Sobic001G038300--Sobic002G396400 Sobic001G038300--Sobic001G107100 Sobic001G038300--Sobic003G250700 Sobic001G418100 Sobic001G418100 Sobic001G038300--Sobic001G418100 Sobic010G047600 Sobic010G047600 Sobic001G038300--Sobic010G047600 Sobic001G434300 Sobic001G434300 Sobic001G038300--Sobic001G434300 Sobic001G475500 Sobic001G475500 Sobic001G038300--Sobic001G475500 Sobic007G150800 Sobic007G150800 Sobic001G038300--Sobic007G150800 Sobic003G122200 Sobic003G122200 Sobic001G038300--Sobic003G122200 Sobic003G250700--Sobic001G107100 Sobic003G250700--Sobic001G038300 Sobic001G046800 Sobic001G046800 Sobic003G250700--Sobic001G046800 Sobic003G000200 Sobic003G000200 Sobic003G250700--Sobic003G000200 Sobic003G250700--Sobic010G047600 Sobic003G321400 Sobic003G321400 Sobic003G250700--Sobic003G321400 Sobic010G014400 Sobic010G014400 Sobic003G250700--Sobic010G014400 Sobic004G170800 Sobic004G170800 Sobic003G250700--Sobic004G170800 Sobic003G250700--Sobic001G156500 Sobic002G396400--Sobic001G418100 Sobic002G396400--Sobic001G038300 Sobic002G396400--Sobic001G475500 Sobic001G409100 Sobic001G409100 Sobic002G396400--Sobic001G409100 Sobic002G128800 Sobic002G128800 Sobic002G396400--Sobic002G128800 Sobic009G232100 Sobic009G232100 Sobic002G396400--Sobic009G232100 Sobic002G154600 Sobic002G154600 Sobic002G396400--Sobic002G154600 Sobic009G181800 Sobic009G181800 Sobic002G396400--Sobic009G181800 Sobic009G088900 Sobic009G088900 Sobic002G396400--Sobic009G088900 Sobic001G528600 Sobic001G528600 Sobic001G107200--Sobic001G528600 Sobic006G191700 Sobic006G191700 Sobic001G107200--Sobic006G191700 Sobic001G107200--Sobic001G107100 Sobic002G350400 Sobic002G350400 Sobic001G107200--Sobic002G350400 Sobic005G047100 Sobic005G047100 Sobic001G107200--Sobic005G047100 Sobic007G094400 Sobic007G094400 Sobic001G107200--Sobic007G094400 Sobic001G107200--Sobic003G250700 Sobic003G011100 Sobic003G011100 Sobic001G107200--Sobic003G011100 Sobic001G107200--Sobic006G278100 Sobic002G333800--Sobic001G107100 Sobic002G333800--Sobic001G038300 Sobic002G333800--Sobic001G409100 Sobic002G333800--Sobic006G191700 Sobic002G333800--Sobic002G128800 Sobic002G251100 Sobic002G251100 Sobic002G333800--Sobic002G251100 Sobic002G333800--Sobic002G396400 Sobic002G333800--Sobic006G278100 Sobic003G340100 Sobic003G340100 Sobic002G333800--Sobic003G340100 Sobic002G252000--Sobic002G128800 Sobic002G338400 Sobic002G338400 Sobic002G252000--Sobic002G338400 Sobic002G252000--Sobic001G418100 Sobic002G252000--Sobic002G396400 Sobic006G156000 Sobic006G156000 Sobic002G252000--Sobic006G156000 Sobic002G252000--Sobic001G038300 Sobic002G252000--Sobic001G107100 Sobic003G443300 Sobic003G443300 Sobic002G252000--Sobic003G443300 Sobic003G219800 Sobic003G219800 Sobic002G252000--Sobic003G219800 Sobic006G278100--Sobic007G150800 Sobic006G278100--Sobic001G107100 Sobic006G278100--Sobic002G128800 Sobic006G278100--Sobic003G250700 Sobic009G232200 Sobic009G232200 Sobic006G278100--Sobic009G232200 Sobic006G278100--Sobic002G338400 Sobic006G278100--Sobic003G122200 Sobic006G278100--Sobic006G191700 Sobic001G261549 Sobic001G261549 Sobic006G278100--Sobic001G261549 Sobic001G156500--Sobic003G250700 Sobic001G156500--Sobic010G047600 Sobic003G115200 Sobic003G115200 Sobic001G156500--Sobic003G115200 Sobic001G156500--Sobic003G000200 Sobic001G261460 Sobic001G261460 Sobic001G156500--Sobic001G261460 Sobic008G055100 Sobic008G055100 Sobic001G156500--Sobic008G055100 Sobic001G156500--Sobic010G014400 Sobic003G121000 Sobic003G121000 Sobic001G156500--Sobic003G121000 Sobic001G156500--Sobic009G232100 Sobic003G206700 Sobic003G206700 Sobic007G090436--Sobic003G206700 Sobic007G090436--Sobic003G250700 Sobic007G090436--Sobic001G107100 Sobic007G147800 Sobic007G147800 Sobic007G090436--Sobic007G147800 Sobic007G090436--Sobic002G338400 Sobic007G090436--Sobic010G014400 Sobic001G144800 Sobic001G144800 Sobic007G090436--Sobic001G144800 Sobic002G244300 Sobic002G244300 Sobic007G090436--Sobic002G244300 Sobic007G090436--Sobic001G046800
Octagon: transcription factors


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