Gene annotation
Transcriptome id Sobic.002G350400.2,Sobic.002G350400.1
Synonym TUA5, Sb02g037260
Functional annotation tubulin/FtsZ domain containing protein, putative, expressed
UniProt A0A1B6QF50 , A0A1B6QF48
Pfam PF03953 PF00091 PF00091 PF03953
Panther DB PTHR11588 PTHR11588:SF48
NCBI CDD KOG1376; Alpha tubulin
KEGG Orthology K07374; tubulin alpha
Gene Ontology GO:0003924; GTPase activity GO:0007017microtubule-based process GO:0005874microtubule


Orthologs (automatic annotation)
TAIR AT5G19780 : tubulin alpha-5
RAP-DB (Rice) LOC_Os07g38730.1 : tubulin/FtsZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053045 , Zm00025a014972 , Zm00025a048479
Brachypodium KQK15574 , KQK22854
Barley HORVU5Hr1G098960.5 , HORVU5Hr1G098960.4 , HORVU5Hr1G098960.7 , HORVU5Hr1G098960.6 , HORVU5Hr1G098960.1 , HORVU5Hr1G098960.3 , HORVU5Hr1G098960.2 , HORVU5Hr1G098960.9 , HORVU5Hr1G098960.8 , HORVU2Hr1G037570.4 , HORVU2Hr1G037570.5 , HORVU2Hr1G037570.2 , HORVU2Hr1G037570.3 , HORVU2Hr1G037570.1 , HORVU2Hr1G037550.1 , HORVU2Hr1G037550.2 , HORVU2Hr1G037550.3 , HORVU4Hr1G009520.4 , HORVU4Hr1G009520.5 , HORVU4Hr1G009520.2 , HORVU4Hr1G009520.3 , HORVU4Hr1G009520.1 , HORVU5Hr1G098960.11 , HORVU5Hr1G098960.12 , HORVU2Hr1G037560.1 , HORVU2Hr1G037560.2
Wheat TraesCS4D02G057000 , TraesCS4A02G065700 , TraesCS4A02G257800 , TraesCS2D02G202200 , TraesCS2A02G185500 , TraesCS2A02G185500 , TraesCS4B02G056700 , TraesCS4B02G056700 , TraesCS4B02G243100 , TraesCS2B02G221800 , TraesCS2B02G221800 , TraesCS4D02G242700 , TraesCS1A02G350200 , TraesCS1A02G350200 , TraesCS1A02G350200 , TraesCS1A02G350200
Populus PNT20340 , PNT20342 , PNT20341


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cDNA sequences
Sobic.002G350400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G038300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
2 Sobic.001G107200 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
3 Sobic.003G250700 fasciclin domain containing protein, expressed -
4 Sobic.003G122200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
5 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
6 Sobic.005G047100 actin, putative, expressed K10355: actin, other eukaryote
7 Sobic.001G107100 "SRS5(Ortholog in rice:Segami, 2012)"(PubMedID : 31659833)@tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
8 Sobic.001G131600 expressed protein -
9 Sobic.002G396400 uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed -
10 Sobic.006G278100 expressed protein -
11 Sobic.002G128800 fiber protein Fb34, putative, expressed -
12 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
13 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
14 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
15 Sobic.006G057200 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
16 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
17 Sobic.007G150800 expressed protein -
18 Sobic.001G344500 sucrose synthase(PubMedID : 26616172)@sucrose synthase, putative, expressed K00695: sucrose synthase
19 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
20 Sobic.006G102900 expressed protein -


Gene co-expression network
sample Sobic002G350400 Sobic002G350400 Sobic001G038300 Sobic001G038300 Sobic002G350400--Sobic001G038300 Sobic001G107200 Sobic001G107200 Sobic002G350400--Sobic001G107200 Sobic003G250700 Sobic003G250700 Sobic002G350400--Sobic003G250700 Sobic003G122200 Sobic003G122200 Sobic002G350400--Sobic003G122200 Sobic001G475500 Sobic001G475500 Sobic002G350400--Sobic001G475500 Sobic005G047100 Sobic005G047100 Sobic002G350400--Sobic005G047100 Sobic001G107100 Sobic001G107100 Sobic002G350400--Sobic001G107100 Sobic001G131600 Sobic001G131600 Sobic002G350400--Sobic001G131600 Sobic002G396400 Sobic002G396400 Sobic002G350400--Sobic002G396400 Sobic001G038300--Sobic002G396400 Sobic001G038300--Sobic001G107100 Sobic001G038300--Sobic003G250700 Sobic001G418100 Sobic001G418100 Sobic001G038300--Sobic001G418100 Sobic010G047600 Sobic010G047600 Sobic001G038300--Sobic010G047600 Sobic001G434300 Sobic001G434300 Sobic001G038300--Sobic001G434300 Sobic001G038300--Sobic001G475500 Sobic007G150800 Sobic007G150800 Sobic001G038300--Sobic007G150800 Sobic001G038300--Sobic003G122200 Sobic001G528600 Sobic001G528600 Sobic001G107200--Sobic001G528600 Sobic006G191700 Sobic006G191700 Sobic001G107200--Sobic006G191700 Sobic001G107200--Sobic001G107100 Sobic001G107200--Sobic002G350400 Sobic001G107200--Sobic005G047100 Sobic007G094400 Sobic007G094400 Sobic001G107200--Sobic007G094400 Sobic001G107200--Sobic003G250700 Sobic003G011100 Sobic003G011100 Sobic001G107200--Sobic003G011100 Sobic006G278100 Sobic006G278100 Sobic001G107200--Sobic006G278100 Sobic003G250700--Sobic001G107100 Sobic003G250700--Sobic001G038300 Sobic001G046800 Sobic001G046800 Sobic003G250700--Sobic001G046800 Sobic003G000200 Sobic003G000200 Sobic003G250700--Sobic003G000200 Sobic003G250700--Sobic010G047600 Sobic003G321400 Sobic003G321400 Sobic003G250700--Sobic003G321400 Sobic010G014400 Sobic010G014400 Sobic003G250700--Sobic010G014400 Sobic004G170800 Sobic004G170800 Sobic003G250700--Sobic004G170800 Sobic001G156500 Sobic001G156500 Sobic003G250700--Sobic001G156500 Sobic003G122200--Sobic001G475500 Sobic003G122200--Sobic001G418100 Sobic003G122200--Sobic007G150800 Sobic005G112800 Sobic005G112800 Sobic003G122200--Sobic005G112800 Sobic003G034600 Sobic003G034600 Sobic003G122200--Sobic003G034600 Sobic010G264300 Sobic010G264300 Sobic003G122200--Sobic010G264300 Sobic003G122200--Sobic001G038300 Sobic004G055700 Sobic004G055700 Sobic003G122200--Sobic004G055700 Sobic001G040100 Sobic001G040100 Sobic003G122200--Sobic001G040100 Sobic001G502900 Sobic001G502900 Sobic001G475500--Sobic001G502900 Sobic003G160700 Sobic003G160700 Sobic001G475500--Sobic003G160700 Sobic001G475500--Sobic003G122200 Sobic005G113300 Sobic005G113300 Sobic001G475500--Sobic005G113300 Sobic001G475500--Sobic007G150800 Sobic009G173500 Sobic009G173500 Sobic001G475500--Sobic009G173500 Sobic001G361600 Sobic001G361600 Sobic001G475500--Sobic001G361600 Sobic004G220000 Sobic004G220000 Sobic001G475500--Sobic004G220000 Sobic003G117500 Sobic003G117500 Sobic001G475500--Sobic003G117500 Sobic004G297950 Sobic004G297950 Sobic005G047100--Sobic004G297950 Sobic003G247600 Sobic003G247600 Sobic005G047100--Sobic003G247600 Sobic007G225400 Sobic007G225400 Sobic005G047100--Sobic007G225400 Sobic004G170900 Sobic004G170900 Sobic005G047100--Sobic004G170900 Sobic001G521300 Sobic001G521300 Sobic005G047100--Sobic001G521300 Sobic005G047100--Sobic003G321400 Sobic005G047100--Sobic004G170800 Sobic003G135400 Sobic003G135400 Sobic005G047100--Sobic003G135400 Sobic003G420100 Sobic003G420100 Sobic005G047100--Sobic003G420100 Sobic001G107100--Sobic001G038300 Sobic001G107100--Sobic003G250700 Sobic001G107100--Sobic002G396400 Sobic001G107100--Sobic001G107200 Sobic002G333800 Sobic002G333800 Sobic001G107100--Sobic002G333800 Sobic002G252000 Sobic002G252000 Sobic001G107100--Sobic002G252000 Sobic001G107100--Sobic006G278100 Sobic001G107100--Sobic001G156500 Sobic007G090436 Sobic007G090436 Sobic001G107100--Sobic007G090436 Sobic009G189200 Sobic009G189200 Sobic001G131600--Sobic009G189200 Sobic001G131600--Sobic002G350400 Sobic001G131600--Sobic003G122200 Sobic006G102900 Sobic006G102900 Sobic001G131600--Sobic006G102900 Sobic001G131600--Sobic005G047100 Sobic004G285900 Sobic004G285900 Sobic001G131600--Sobic004G285900 Sobic001G131600--Sobic003G135400 Sobic002G111500 Sobic002G111500 Sobic001G131600--Sobic002G111500 Sobic003G364900 Sobic003G364900 Sobic001G131600--Sobic003G364900 Sobic002G396400--Sobic001G418100 Sobic002G396400--Sobic001G038300 Sobic002G396400--Sobic001G475500 Sobic001G409100 Sobic001G409100 Sobic002G396400--Sobic001G409100 Sobic002G128800 Sobic002G128800 Sobic002G396400--Sobic002G128800 Sobic009G232100 Sobic009G232100 Sobic002G396400--Sobic009G232100 Sobic002G154600 Sobic002G154600 Sobic002G396400--Sobic002G154600 Sobic009G181800 Sobic009G181800 Sobic002G396400--Sobic009G181800 Sobic009G088900 Sobic009G088900 Sobic002G396400--Sobic009G088900
Octagon: transcription factors


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