Gene annotation
Transcriptome id Sobic.005G142500.1
Synonym Sb05g020780
Functional annotation plant protein of unknown function domain containing protein, expressed
UniProt A0A1B6PSG6
Pfam PF03140
Panther DB PTHR31549 PTHR31549:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G50170 : Plant protein of unknown function (DUF247)
RAP-DB (Rice) LOC_Os11g34090.1 : plant protein of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015717 , Zm00025a046576 , Zm00025a033558
Brachypodium KQK07792 , KQJ88313 , PNT63518 , PNT63512 , PNT63516 , KQJ88308 , KQJ86728 , KQK01655
Barley HORVU1Hr1G061120.1 , HORVU1Hr1G061120.3 , HORVU1Hr1G061120.2 , HORVU2Hr1G127210.1 , HORVU2Hr1G127210.2 , HORVU7Hr1G089850.1 , HORVU7Hr1G089850.3 , HORVU7Hr1G089850.2 , HORVU7Hr1G089850.5 , HORVU7Hr1G089850.4
Wheat TraesCS6B02G042300 , TraesCS3A02G428500 , TraesCS6A02G029700 , TraesCS1D02G253000 , TraesCS4D02G108600 , TraesCS6D02G033900 , TraesCS2B02G619400 , TraesCS1A02G253500 , TraesCS6D02G221900 , TraesCS4B02G110900 , TraesCS6D02G034000 , TraesCS7A02G375800 , TraesCS6A02G239500 , TraesCS6A02G239500 , TraesCS6A02G239500 , TraesCS6A02G029600 , TraesCS6A02G029600 , TraesCS2A02G559900 , TraesCS4A02G207400 , TraesCS6D02G221900 , TraesCS1B02G264700 , TraesCS2D02G570100 , TraesCS7D02G372300 , TraesCS6A02G029400 , TraesCS3D02G424200 , TraesCS3B02G466000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G170800 serine-aspartate repeat-containing protein I precursor, putative, expressed -
2 Sobic.004G050700 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.001G264300 hsp20/alpha crystallin family protein, putative, expressed -
4 Sobic.001G264400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
5 Sobic.003G427700 expressed protein -
6 Sobic.005G051600 plant protein of unknown function domain containing protein, expressed -
7 Sobic.002G247800 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL17 - SBP-box gene family member, expressed -
8 Sobic.009G221800 reticulon domain containing protein, putative, expressed -
9 Sobic.009G130300 AWPM-19-like membrane family protein, putative, expressed -
10 Sobic.003G250700 fasciclin domain containing protein, expressed -
11 Sobic.003G321400 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
13 Sobic.001G310300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.003G078900 reticulon domain containing protein, putative, expressed -
15 Sobic.003G000200 AWPM-19-like membrane family protein, putative, expressed -
16 Sobic.001G481000 expressed protein -
17 Sobic.001G470100 OsFBX77 - F-box domain containing protein, expressed -
18 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
19 Sobic.007G150800 expressed protein -
20 Sobic.001G265800 hsp20/alpha crystallin family protein, putative, expressed -


Gene co-expression network
sample Sobic005G142500 Sobic005G142500 Sobic004G170800 Sobic004G170800 Sobic005G142500--Sobic004G170800 Sobic004G050700 Sobic004G050700 Sobic005G142500--Sobic004G050700 Sobic001G264300 Sobic001G264300 Sobic005G142500--Sobic001G264300 Sobic001G264400 Sobic001G264400 Sobic005G142500--Sobic001G264400 Sobic003G427700 Sobic003G427700 Sobic005G142500--Sobic003G427700 Sobic005G051600 Sobic005G051600 Sobic005G142500--Sobic005G051600 Sobic002G247800 Sobic002G247800 Sobic005G142500--Sobic002G247800 Sobic009G221800 Sobic009G221800 Sobic005G142500--Sobic009G221800 Sobic009G130300 Sobic009G130300 Sobic005G142500--Sobic009G130300 Sobic004G170800--Sobic001G264400 Sobic001G245800 Sobic001G245800 Sobic004G170800--Sobic001G245800 Sobic003G250700 Sobic003G250700 Sobic004G170800--Sobic003G250700 Sobic004G170800--Sobic005G142500 Sobic003G115200 Sobic003G115200 Sobic004G170800--Sobic003G115200 Sobic004G170800--Sobic009G221800 Sobic004G170800--Sobic001G264300 Sobic005G047100 Sobic005G047100 Sobic004G170800--Sobic005G047100 Sobic003G321400 Sobic003G321400 Sobic004G170800--Sobic003G321400 Sobic010G047600 Sobic010G047600 Sobic004G050700--Sobic010G047600 Sobic004G050700--Sobic009G221800 Sobic004G050700--Sobic003G321400 Sobic001G310300 Sobic001G310300 Sobic004G050700--Sobic001G310300 Sobic003G000200 Sobic003G000200 Sobic004G050700--Sobic003G000200 Sobic001G261460 Sobic001G261460 Sobic004G050700--Sobic001G261460 Sobic001G514200 Sobic001G514200 Sobic004G050700--Sobic001G514200 Sobic003G078900 Sobic003G078900 Sobic004G050700--Sobic003G078900 Sobic004G050700--Sobic001G264300 Sobic001G264300--Sobic009G221800 Sobic001G264300--Sobic003G321400 Sobic001G264300--Sobic010G047600 Sobic001G264300--Sobic001G264400 Sobic001G264300--Sobic004G050700 Sobic001G264300--Sobic003G078900 Sobic001G264300--Sobic001G514200 Sobic001G264300--Sobic004G170800 Sobic001G264300--Sobic001G261460 Sobic001G265800 Sobic001G265800 Sobic001G264400--Sobic001G265800 Sobic001G264400--Sobic003G321400 Sobic001G264400--Sobic009G221800 Sobic001G264400--Sobic001G264300 Sobic003G269100 Sobic003G269100 Sobic001G264400--Sobic003G269100 Sobic001G099600 Sobic001G099600 Sobic001G264400--Sobic001G099600 Sobic008G077300 Sobic008G077300 Sobic001G264400--Sobic008G077300 Sobic001G264400--Sobic004G170800 Sobic004G156900 Sobic004G156900 Sobic001G264400--Sobic004G156900 Sobic003G427700--Sobic005G142500 Sobic005G004700 Sobic005G004700 Sobic003G427700--Sobic005G004700 Sobic003G427700--Sobic005G051600 Sobic001G470100 Sobic001G470100 Sobic003G427700--Sobic001G470100 Sobic003G427700--Sobic001G264300 Sobic007G213400 Sobic007G213400 Sobic003G427700--Sobic007G213400 Sobic001G038300 Sobic001G038300 Sobic003G427700--Sobic001G038300 Sobic003G427700--Sobic002G247800 Sobic010G159100 Sobic010G159100 Sobic003G427700--Sobic010G159100 Sobic005G130550 Sobic005G130550 Sobic005G051600--Sobic005G130550 Sobic005G051600--Sobic005G142500 Sobic005G051600--Sobic001G264400 Sobic004G297950 Sobic004G297950 Sobic005G051600--Sobic004G297950 Sobic005G051600--Sobic003G427700 Sobic005G130600 Sobic005G130600 Sobic005G051600--Sobic005G130600 Sobic007G021000 Sobic007G021000 Sobic005G051600--Sobic007G021000 Sobic005G051600--Sobic003G321400 Sobic004G170900 Sobic004G170900 Sobic005G051600--Sobic004G170900 Sobic007G225400 Sobic007G225400 Sobic002G247800--Sobic007G225400 Sobic002G179150 Sobic002G179150 Sobic002G247800--Sobic002G179150 Sobic002G247800--Sobic004G170900 Sobic002G247800--Sobic001G470100 Sobic002G247800--Sobic005G142500 Sobic004G285900 Sobic004G285900 Sobic002G247800--Sobic004G285900 Sobic001G030400 Sobic001G030400 Sobic002G247800--Sobic001G030400 Sobic002G247800--Sobic010G159100 Sobic003G011100 Sobic003G011100 Sobic002G247800--Sobic003G011100 Sobic009G221800--Sobic003G078900 Sobic009G221800--Sobic003G321400 Sobic009G221800--Sobic010G047600 Sobic009G221800--Sobic001G261460 Sobic009G221800--Sobic003G000200 Sobic009G221800--Sobic001G514200 Sobic009G221800--Sobic001G264300 Sobic009G221800--Sobic009G130300 Sobic009G221800--Sobic001G264400 Sobic009G130300--Sobic003G000200 Sobic009G130300--Sobic009G221800 Sobic009G130300--Sobic003G078900 Sobic009G130300--Sobic001G310300 Sobic009G130300--Sobic003G115200 Sobic009G130300--Sobic001G514200 Sobic009G130300--Sobic003G321400 Sobic009G130300--Sobic001G261460 Sobic009G130300--Sobic010G047600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.