Gene annotation
Transcriptome id Sobic.006G144600.1
Synonym Sb06g022330, arpc2b
Functional annotation ARPC2B, putative, expressed
UniProt C5YC00
Pfam PF04045
Panther DB PTHR12058 PTHR12058:SF1
NCBI CDD KOG2826; Actin-related protein Arp2/3 complex, subunit ARPC2
KEGG Orthology K05758; actin related protein 2/3 complex, subunit 2
Gene Ontology GO:0015629; actin cytoskeleton GO:0005885Arp2/3 protein complex


Orthologs (automatic annotation)
TAIR AT2G33385 : actin-related protein C2B
RAP-DB (Rice) LOC_Os04g43290.1 : ARPC2B, putative, expressed
MaizeGDB (Corn) Zm00025a010676
Brachypodium PNT61468 , PNT61465 , PNT61467 , PNT61466
Barley HORVU2Hr1G088840.27 , HORVU2Hr1G088840.26 , HORVU2Hr1G088840.25 , HORVU2Hr1G088840.24 , HORVU2Hr1G088840.23 , HORVU2Hr1G088840.22 , HORVU2Hr1G088840.21 , HORVU2Hr1G088840.20 , HORVU2Hr1G088840.29 , HORVU2Hr1G088840.28 , HORVU2Hr1G088840.30 , HORVU2Hr1G088840.32 , HORVU2Hr1G088840.31 , HORVU2Hr1G088840.18 , HORVU2Hr1G088840.19
Wheat TraesCS2B02G402000 , TraesCS2D02G381700 , TraesCS2D02G381700 , TraesCS2B02G402000 , TraesCS2A02G385000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G406700 expressed protein -
2 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
4 Sobic.002G167600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
5 Sobic.009G170500 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
6 Sobic.001G399200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
7 Sobic.005G229100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
8 Sobic.007G119500 expressed protein -
9 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
10 Sobic.001G072600 expressed protein -
11 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
12 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
13 Sobic.009G162700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
14 Sobic.004G047600 plant-specific domain TIGR01627 family protein, expressed -
15 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
16 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
17 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
18 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
19 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
20 Sobic.010G180100 transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic006G144600 Sobic006G144600 Sobic001G406700 Sobic001G406700 Sobic006G144600--Sobic001G406700 Sobic010G232500 Sobic010G232500 Sobic006G144600--Sobic010G232500 Sobic003G387500 Sobic003G387500 Sobic006G144600--Sobic003G387500 Sobic002G167600 Sobic002G167600 Sobic006G144600--Sobic002G167600 Sobic009G170500 Sobic009G170500 Sobic006G144600--Sobic009G170500 Sobic001G399200 Sobic001G399200 Sobic006G144600--Sobic001G399200 Sobic005G229100 Sobic005G229100 Sobic006G144600--Sobic005G229100 Sobic007G119500 Sobic007G119500 Sobic006G144600--Sobic007G119500 Sobic007G223600 Sobic007G223600 Sobic006G144600--Sobic007G223600 Sobic001G406700--Sobic003G387500 Sobic001G406700--Sobic006G144600 Sobic001G406700--Sobic001G399200 Sobic001G406700--Sobic009G170500 Sobic001G406700--Sobic010G232500 Sobic001G406700--Sobic002G167600 Sobic001G406700--Sobic005G229100 Sobic001G406700--Sobic007G119500 Sobic009G246700 Sobic009G246700 Sobic001G406700--Sobic009G246700 Sobic010G232500--Sobic006G144600 Sobic010G232500--Sobic001G406700 Sobic010G232500--Sobic005G229100 Sobic010G232500--Sobic003G387500 Sobic006G226200 Sobic006G226200 Sobic010G232500--Sobic006G226200 Sobic010G232500--Sobic002G167600 Sobic010G232500--Sobic001G399200 Sobic003G231500 Sobic003G231500 Sobic010G232500--Sobic003G231500 Sobic010G232500--Sobic007G223600 Sobic003G387500--Sobic001G406700 Sobic003G387500--Sobic006G144600 Sobic001G224300 Sobic001G224300 Sobic003G387500--Sobic001G224300 Sobic003G387500--Sobic010G232500 Sobic003G387500--Sobic002G167600 Sobic003G387500--Sobic009G170500 Sobic009G162700 Sobic009G162700 Sobic003G387500--Sobic009G162700 Sobic002G205500 Sobic002G205500 Sobic003G387500--Sobic002G205500 Sobic009G226900 Sobic009G226900 Sobic003G387500--Sobic009G226900 Sobic001G360700 Sobic001G360700 Sobic002G167600--Sobic001G360700 Sobic002G167600--Sobic006G144600 Sobic004G047600 Sobic004G047600 Sobic002G167600--Sobic004G047600 Sobic002G167600--Sobic001G406700 Sobic002G203900 Sobic002G203900 Sobic002G167600--Sobic002G203900 Sobic002G167600--Sobic009G170500 Sobic002G254900 Sobic002G254900 Sobic002G167600--Sobic002G254900 Sobic001G072600 Sobic001G072600 Sobic002G167600--Sobic001G072600 Sobic010G180100 Sobic010G180100 Sobic002G167600--Sobic010G180100 Sobic009G170500--Sobic001G406700 Sobic009G170500--Sobic002G167600 Sobic009G170500--Sobic007G119500 Sobic009G170500--Sobic006G144600 Sobic009G170500--Sobic003G387500 Sobic006G180300 Sobic006G180300 Sobic009G170500--Sobic006G180300 Sobic009G170500--Sobic004G047600 Sobic008G014700 Sobic008G014700 Sobic009G170500--Sobic008G014700 Sobic009G170500--Sobic010G232500 Sobic001G399200--Sobic001G406700 Sobic001G399200--Sobic006G144600 Sobic001G399200--Sobic010G232500 Sobic001G399200--Sobic003G387500 Sobic001G399200--Sobic005G229100 Sobic001G362100 Sobic001G362100 Sobic001G399200--Sobic001G362100 Sobic001G399200--Sobic007G223600 Sobic001G399200--Sobic006G226200 Sobic001G399200--Sobic009G170500 Sobic005G229100--Sobic007G223600 Sobic005G229100--Sobic010G232500 Sobic005G229100--Sobic002G205500 Sobic005G229100--Sobic006G144600 Sobic005G229100--Sobic001G406700 Sobic002G164600 Sobic002G164600 Sobic005G229100--Sobic002G164600 Sobic005G229100--Sobic006G226200 Sobic005G229100--Sobic003G387500 Sobic005G229100--Sobic001G399200 Sobic007G119500--Sobic009G170500 Sobic003G270400 Sobic003G270400 Sobic007G119500--Sobic003G270400 Sobic007G119500--Sobic004G047600 Sobic007G119500--Sobic001G072600 Sobic007G119500--Sobic002G167600 Sobic003G378800 Sobic003G378800 Sobic007G119500--Sobic003G378800 Sobic007G119500--Sobic001G360700 Sobic007G119500--Sobic006G144600 Sobic007G119500--Sobic001G406700 Sobic007G223600--Sobic002G164600 Sobic007G223600--Sobic002G205500 Sobic007G223600--Sobic006G226200 Sobic003G236701 Sobic003G236701 Sobic007G223600--Sobic003G236701 Sobic003G296400 Sobic003G296400 Sobic007G223600--Sobic003G296400 Sobic007G223600--Sobic005G229100 Sobic006G066500 Sobic006G066500 Sobic007G223600--Sobic006G066500 Sobic007G223600--Sobic001G224300 Sobic008G059800 Sobic008G059800 Sobic007G223600--Sobic008G059800
Octagon: transcription factors


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