Gene annotation
Transcriptome id Sobic.001G336700.1
Synonym IRX6, COBL4, Brittle Culm 1, SbBC1, Sb01g032480
Functional annotation "Involved in secondary cell wall formation. Reduced mechanical strength in culms and leaves, thinner cell walls, reduced cellulose content, increased lignin content, in the mutant. The highest gene expression level in culms. The highest expression levels in vascular bundles and in sub-epidermal regions, where developing sclerenchyma cells are located." (PubMedID : 30590744)
COBRA-like protein precursor, putative, expressed
UniProt C5WWK3
Pfam PF04833
Panther DB PTHR31673 PTHR31673:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016049; cell growth GO:0010215cellulose microfibril organization


Orthologs (automatic annotation)
TAIR AT5G15630 : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
RAP-DB (Rice) LOC_Os03g30250.1 : COBRA-like protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a052182 , Zm00025a048697 , Zm00025a015499
Brachypodium KQK15342 , KQK21273 , PNT74793 , PNT74792 , KQK15343
Barley HORVU2Hr1G033080.1 , HORVU2Hr1G033060.16 , HORVU2Hr1G033060.14 , HORVU2Hr1G033060.15 , HORVU2Hr1G033060.12 , HORVU2Hr1G033060.13 , HORVU2Hr1G033060.10 , HORVU2Hr1G033060.11 , HORVU2Hr1G033060.8 , HORVU2Hr1G033060.9 , HORVU2Hr1G033060.4 , HORVU0Hr1G004650.6 , HORVU2Hr1G033060.6 , HORVU0Hr1G004650.4 , HORVU0Hr1G004650.3 , HORVU0Hr1G004650.2 , HORVU0Hr1G004650.1 , HORVU2Hr1G033060.3 , HORVU3Hr1G007580.9 , HORVU3Hr1G007580.8 , HORVU3Hr1G007580.1 , HORVU3Hr1G007580.3 , HORVU3Hr1G007580.2 , HORVU3Hr1G007580.5 , HORVU3Hr1G007580.4 , HORVU3Hr1G007580.7 , HORVU3Hr1G007580.6 , HORVU3Hr1G009960.1 , HORVU3Hr1G009960.2 , HORVU2Hr1G033060.7 , HORVU2Hr1G033060.5 , HORVU0Hr1G004650.5 , HORVU2Hr1G033060.1 , HORVU2Hr1G033060.2
Wheat TraesCS2B02G201400 , TraesCS6D02G364400 , TraesCS2A02G175000 , TraesCS6B02G418400 , TraesCS2D02G182400
Populus -


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cDNA sequences
Sobic.001G336700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G082300 expressed protein -
2 Sobic.010G022400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
3 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
4 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
5 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
6 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
7 Sobic.009G048000 villin, putative, expressed K08017: advillin
8 Sobic.005G087200 plant-specific domain TIGR01627 family protein, expressed K18801: glucuronoxylan 4-O-methyltransferase
9 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
10 Sobic.003G236701 - -
11 Sobic.003G220000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed -
12 Sobic.009G241600 Expressed in older stem(PubMedID : 28649278)@zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K18753: butyrate response factor
13 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
14 Sobic.001G406700 expressed protein -
15 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
17 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
18 Sobic.010G112800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
19 Sobic.003G112200 Cupin domain containing protein, expressed -
20 Sobic.006G066500 expressed protein -


Gene co-expression network
sample Sobic001G336700 Sobic001G336700 Sobic002G082300 Sobic002G082300 Sobic001G336700--Sobic002G082300 Sobic010G022400 Sobic010G022400 Sobic001G336700--Sobic010G022400 Sobic009G226900 Sobic009G226900 Sobic001G336700--Sobic009G226900 Sobic002G205500 Sobic002G205500 Sobic001G336700--Sobic002G205500 Sobic006G226200 Sobic006G226200 Sobic001G336700--Sobic006G226200 Sobic003G387500 Sobic003G387500 Sobic001G336700--Sobic003G387500 Sobic009G048000 Sobic009G048000 Sobic001G336700--Sobic009G048000 Sobic005G087200 Sobic005G087200 Sobic001G336700--Sobic005G087200 Sobic003G296400 Sobic003G296400 Sobic001G336700--Sobic003G296400 Sobic002G082300--Sobic001G336700 Sobic003G220000 Sobic003G220000 Sobic002G082300--Sobic003G220000 Sobic002G082300--Sobic006G226200 Sobic003G254700 Sobic003G254700 Sobic002G082300--Sobic003G254700 Sobic009G246700 Sobic009G246700 Sobic002G082300--Sobic009G246700 Sobic003G112200 Sobic003G112200 Sobic002G082300--Sobic003G112200 Sobic002G118700 Sobic002G118700 Sobic002G082300--Sobic002G118700 Sobic002G164600 Sobic002G164600 Sobic002G082300--Sobic002G164600 Sobic010G232500 Sobic010G232500 Sobic002G082300--Sobic010G232500 Sobic001G406700 Sobic001G406700 Sobic010G022400--Sobic001G406700 Sobic010G022400--Sobic003G387500 Sobic010G022400--Sobic001G336700 Sobic010G180100 Sobic010G180100 Sobic010G022400--Sobic010G180100 Sobic010G022400--Sobic009G226900 Sobic009G170500 Sobic009G170500 Sobic010G022400--Sobic009G170500 Sobic002G167600 Sobic002G167600 Sobic010G022400--Sobic002G167600 Sobic005G107500 Sobic005G107500 Sobic010G022400--Sobic005G107500 Sobic002G254900 Sobic002G254900 Sobic010G022400--Sobic002G254900 Sobic003G062000 Sobic003G062000 Sobic009G226900--Sobic003G062000 Sobic001G224300 Sobic001G224300 Sobic009G226900--Sobic001G224300 Sobic009G226900--Sobic003G296400 Sobic009G226900--Sobic002G205500 Sobic009G226900--Sobic003G387500 Sobic006G036400 Sobic006G036400 Sobic009G226900--Sobic006G036400 Sobic009G226900--Sobic001G406700 Sobic009G226900--Sobic005G087200 Sobic006G075000 Sobic006G075000 Sobic009G226900--Sobic006G075000 Sobic002G205500--Sobic003G296400 Sobic002G205500--Sobic001G224300 Sobic007G223600 Sobic007G223600 Sobic002G205500--Sobic007G223600 Sobic002G205500--Sobic006G226200 Sobic005G229100 Sobic005G229100 Sobic002G205500--Sobic005G229100 Sobic002G205500--Sobic003G387500 Sobic002G205500--Sobic009G048000 Sobic002G205500--Sobic006G036400 Sobic002G205500--Sobic009G226900 Sobic003G236701 Sobic003G236701 Sobic006G226200--Sobic003G236701 Sobic006G066500 Sobic006G066500 Sobic006G226200--Sobic006G066500 Sobic006G226200--Sobic007G223600 Sobic006G226200--Sobic003G112200 Sobic006G226200--Sobic002G164600 Sobic006G226200--Sobic003G296400 Sobic006G226200--Sobic009G048000 Sobic003G231500 Sobic003G231500 Sobic006G226200--Sobic003G231500 Sobic006G226200--Sobic002G205500 Sobic003G387500--Sobic001G406700 Sobic006G144600 Sobic006G144600 Sobic003G387500--Sobic006G144600 Sobic003G387500--Sobic001G224300 Sobic003G387500--Sobic010G232500 Sobic003G387500--Sobic002G167600 Sobic003G387500--Sobic009G170500 Sobic009G162700 Sobic009G162700 Sobic003G387500--Sobic009G162700 Sobic003G387500--Sobic002G205500 Sobic003G387500--Sobic009G226900 Sobic009G048000--Sobic006G226200 Sobic009G048000--Sobic003G296400 Sobic009G048000--Sobic002G205500 Sobic009G048000--Sobic003G236701 Sobic001G468300 Sobic001G468300 Sobic009G048000--Sobic001G468300 Sobic009G048000--Sobic009G226900 Sobic009G048000--Sobic001G224300 Sobic009G048000--Sobic003G112200 Sobic009G048000--Sobic007G223600 Sobic005G087200--Sobic003G387500 Sobic005G087200--Sobic009G226900 Sobic005G087200--Sobic002G164600 Sobic005G087200--Sobic003G236701 Sobic005G087200--Sobic003G112200 Sobic005G087200--Sobic001G336700 Sobic005G087200--Sobic001G406700 Sobic009G241600 Sobic009G241600 Sobic005G087200--Sobic009G241600 Sobic008G112200 Sobic008G112200 Sobic005G087200--Sobic008G112200 Sobic003G296400--Sobic002G205500 Sobic003G296400--Sobic001G224300 Sobic003G296400--Sobic006G036400 Sobic003G296400--Sobic007G223600 Sobic003G296400--Sobic006G226200 Sobic003G296400--Sobic009G226900 Sobic003G296400--Sobic009G048000 Sobic004G221300 Sobic004G221300 Sobic003G296400--Sobic004G221300 Sobic003G296400--Sobic003G236701
Octagon: transcription factors


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